Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10733
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 142 2e-35
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 142 2e-35
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 3.6
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 24 6.3
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 24 6.3
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 24 6.3
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 24 8.3
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 24 8.3
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 24 8.3
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|... 24 8.3
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 142 bits (343), Expect = 2e-35
Identities = 63/84 (75%), Positives = 74/84 (88%)
Frame = +1
Query: 1 VRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGIYGLDFYVV 180
VRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYD SIGIYG+DFYVV
Sbjct: 71 VRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVV 130
Query: 181 LGRPGFNVAHRRRKTGKVGFPHRL 252
+ RPG VA R+ + G+VG+ H++
Sbjct: 131 MDRPGMRVARRKAQRGRVGYTHKI 154
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 210 QKA*DRKSGISPPPHKEDAMKWFQQKYD 293
+KA + G + + ED + WF+QKYD
Sbjct: 141 RKAQRGRVGYTHKINAEDTINWFKQKYD 168
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 142 bits (343), Expect = 2e-35
Identities = 63/84 (75%), Positives = 74/84 (88%)
Frame = +1
Query: 1 VRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGIYGLDFYVV 180
VRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYD SIGIYG+DFYVV
Sbjct: 71 VRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVV 130
Query: 181 LGRPGFNVAHRRRKTGKVGFPHRL 252
+ RPG VA R+ + G+VG+ H++
Sbjct: 131 MDRPGMRVARRKAQRGRVGYTHKI 154
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 210 QKA*DRKSGISPPPHKEDAMKWFQQKYD 293
+KA + G + + ED + WF+QKYD
Sbjct: 141 RKAQRGRVGYTHKINAEDTINWFKQKYD 168
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 3.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 147 NWNLWTGLLRRTWPARFQRSTQK 215
NW+ L R WP F RS+Q+
Sbjct: 644 NWSSIGRLRRSEWPRSFNRSSQQ 666
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 24.2 bits (50), Expect = 6.3
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -2
Query: 207 CYVETWPAKYDVKVQSINSN*VIVLDTQVNVFLNTEAKI 91
C V+TW ++ + +S N + ++D N L E +
Sbjct: 504 CIVDTWMLQHAPQSKSANIEEMFIVDANENQVLEPELMV 542
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 24.2 bits (50), Expect = 6.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 109 QEHIDLGIKYDHSIGIYGLDFYVVLGRPG 195
++ +D +KY HS G+YG D+ +L G
Sbjct: 227 KDALDTVLKYFHSFGMYG-DYSYLLAMYG 254
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 24.2 bits (50), Expect = 6.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 2 SEELKQKKSLRGV*KSENMNCGVTTSPPRVIL 97
S++L + SLR V + + + GV PPR ++
Sbjct: 76 SDQLDSRPSLRRVSSAPDSHKGVEAPPPRPLI 107
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 23.8 bits (49), Expect = 8.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 129 TQVNVFLNTEAKITRGGEVVTPQFIFSDFQTPLKDFFCF 13
TQ+ FL T KIT G++ + I F + L++ CF
Sbjct: 24 TQLIYFL-TSKKITNLGKIRLVKSIRDSFLSQLENILCF 61
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 23.8 bits (49), Expect = 8.3
Identities = 6/24 (25%), Positives = 17/24 (70%)
Frame = +1
Query: 118 IDLGIKYDHSIGIYGLDFYVVLGR 189
+D+ + +DH++G+Y L +++ +
Sbjct: 830 VDVNMLFDHALGLYDLKLALLIAQ 853
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 23.8 bits (49), Expect = 8.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 97 GFGIQEHIDLGIKYDHSIGIYG 162
G I +H+D+ ++ D IG+ G
Sbjct: 530 GHPILKHVDIDVQMDSRIGVVG 551
>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 405
Score = 23.8 bits (49), Expect = 8.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 116 TLTWVSSTITQLEFMDWTFT 175
T WVSS +EF+D+ F+
Sbjct: 382 TTVWVSSPHETIEFLDYYFS 401
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,912
Number of Sequences: 5004
Number of extensions: 29241
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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