Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10733
(364 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 127 2e-30
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 127 2e-30
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 74 4e-14
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 64 3e-11
02_02_0196 + 7685933-7685961,7686086-7686284 58 3e-09
10_01_0105 + 1287423-1289924 27 4.5
06_01_0804 + 6038640-6040262 26 7.9
03_02_0072 + 5435744-5436031,5436159-5436326,5436555-5436671 26 7.9
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 127 bits (307), Expect = 2e-30
Identities = 60/87 (68%), Positives = 69/87 (79%)
Frame = +1
Query: 1 VRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGIYGLDFYVV 180
VRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD S GIYG+DFYVV
Sbjct: 73 VRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVV 132
Query: 181 LGRPGFNVAHRRRKTGKVGFPHRLTRK 261
L R G+ VA RRR +VG HR+T++
Sbjct: 133 LERAGYRVARRRRCKSRVGIQHRVTKE 159
Score = 33.1 bits (72), Expect = 0.069
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +3
Query: 234 GISPPPHKEDAMKWFQQKYDG 296
GI KEDAMKWFQ KY+G
Sbjct: 151 GIQHRVTKEDAMKWFQVKYEG 171
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 127 bits (307), Expect = 2e-30
Identities = 60/87 (68%), Positives = 69/87 (79%)
Frame = +1
Query: 1 VRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGIYGLDFYVV 180
VRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD S GIYG+DFYVV
Sbjct: 73 VRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVV 132
Query: 181 LGRPGFNVAHRRRKTGKVGFPHRLTRK 261
L R G+ VA RRR +VG HR+T++
Sbjct: 133 LERAGYRVARRRRCKSRVGIQHRVTKE 159
Score = 33.1 bits (72), Expect = 0.069
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +3
Query: 234 GISPPPHKEDAMKWFQQKYDG 296
GI KEDAMKWFQ KY+G
Sbjct: 151 GIQHRVTKEDAMKWFQVKYEG 171
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 73.7 bits (173), Expect = 4e-14
Identities = 35/45 (77%), Positives = 38/45 (84%)
Frame = +1
Query: 1 VRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 135
VRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 99 VRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 64.1 bits (149), Expect = 3e-11
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +1
Query: 1 VRGAKAEEILERGLKVREYELRRDNF--SATGNFGFGIQEHIDLGIKYDHSIGIYGLDFY 174
VRG KA ++LE GLK+ DN S T + + +YD S GIYG+DFY
Sbjct: 73 VRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQCFRYDPSTGIYGMDFY 129
Query: 175 VVLGRPGFNVAHRRRKTGKVGFPHRLTRK 261
VVL R G+ VA RRR +VG HR+T++
Sbjct: 130 VVLERAGYRVARRRRCKSRVGIQHRVTKE 158
Score = 33.1 bits (72), Expect = 0.069
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +3
Query: 234 GISPPPHKEDAMKWFQQKYDG 296
GI KEDAMKWFQ KY+G
Sbjct: 150 GIQHRVTKEDAMKWFQVKYEG 170
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 57.6 bits (133), Expect = 3e-09
Identities = 25/42 (59%), Positives = 31/42 (73%)
Frame = +1
Query: 136 YDHSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTRK 261
YD S GIYG+DFYVVL R G+ VA RRR +VG HR+T++
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKE 52
Score = 33.1 bits (72), Expect = 0.069
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +3
Query: 234 GISPPPHKEDAMKWFQQKYDG 296
GI KEDAMKWFQ KY+G
Sbjct: 44 GIQHRVTKEDAMKWFQVKYEG 64
>10_01_0105 + 1287423-1289924
Length = 833
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 107 FKNTLTWVSSTITQLEFMDWTFTSY 181
F TL + S +T LE++D +FTS+
Sbjct: 145 FSGTLPPLLSNLTNLEYLDLSFTSF 169
>06_01_0804 + 6038640-6040262
Length = 540
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 222 DRKSGISPPPHKEDAMKWFQQKYDG 296
D G PPH +WF+++Y G
Sbjct: 7 DPSHGGGAPPHDHTEDEWFKERYGG 31
>03_02_0072 + 5435744-5436031,5436159-5436326,5436555-5436671
Length = 190
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 88 GNFGFGIQEHIDLGIKYDHSI 150
G F I+EH+DLG +Y++++
Sbjct: 140 GGFNPTIKEHLDLGTEYENAL 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,439,893
Number of Sequences: 37544
Number of extensions: 184966
Number of successful extensions: 505
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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