Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10733
(364 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0) 151 1e-37
SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11) 30 0.65
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11) 29 1.5
SB_59067| Best HMM Match : rve (HMM E-Value=2.1e-15) 28 2.6
SB_54094| Best HMM Match : RnaseH (HMM E-Value=0.022) 28 2.6
SB_53641| Best HMM Match : rve (HMM E-Value=7.9e-14) 28 2.6
SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_27862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_18792| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_14213| Best HMM Match : RVT_1 (HMM E-Value=1.4e-24) 28 2.6
SB_5315| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 28 2.6
SB_59489| Best HMM Match : RnaseH (HMM E-Value=0.0047) 28 2.6
SB_54911| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 28 2.6
SB_53337| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_44436| Best HMM Match : RnaseH (HMM E-Value=0.0048) 28 2.6
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08) 28 2.6
SB_16804| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 28 2.6
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 28 2.6
SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25) 28 2.6
SB_52661| Best HMM Match : RVT_thumb (HMM E-Value=3) 27 3.4
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_33781| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 26 8.0
SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 26 8.0
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38) 26 8.0
SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
Length = 260
Score = 151 bits (367), Expect = 1e-37
Identities = 68/86 (79%), Positives = 78/86 (90%)
Frame = +1
Query: 1 VRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGIYGLDFYVV 180
VRG KAEEILE+GLKV+EYEL + FSATGNFGFGIQEHIDLGIKYD SIGIYG+DF+VV
Sbjct: 66 VRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFFVV 125
Query: 181 LGRPGFNVAHRRRKTGKVGFPHRLTR 258
LGRPGFN++ R+ K G+VGFPHRLT+
Sbjct: 126 LGRPGFNISKRKHKQGRVGFPHRLTK 151
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 255 KEDAMKWFQQK 287
K+DAMKWFQQK
Sbjct: 151 KDDAMKWFQQK 161
>SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11)
Length = 880
Score = 29.9 bits (64), Expect = 0.65
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + PS+ + KYD+ ++ +
Sbjct: 533 HVQVHTD--HKPLEAIFKKHLASAPPSIARMMLRIQKYDIDIRYV 575
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 29.1 bits (62), Expect = 1.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 224 QEKWDFPTASQGRCYEVVPTEI*WYH 301
Q W+ PT +Q Y T+ WYH
Sbjct: 233 QANWNHPTKTQANWYHPTKTQANWYH 258
>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
Length = 237
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 315 LCY*V*YHHISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
L Y V H++V S H P EA+ K H S P + + KYDV ++ +
Sbjct: 146 LNYYVYGRHVTV--QSDHKPLEAIFKKHISSAPPRIARMMLRIQKYDVNMKYV 196
>SB_59067| Best HMM Match : rve (HMM E-Value=2.1e-15)
Length = 374
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 19 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 61
>SB_54094| Best HMM Match : RnaseH (HMM E-Value=0.022)
Length = 286
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 225 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 267
>SB_53641| Best HMM Match : rve (HMM E-Value=7.9e-14)
Length = 691
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 225 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 267
>SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 259 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 301
>SB_27862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 19 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 61
>SB_18792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 271 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 313
>SB_14213| Best HMM Match : RVT_1 (HMM E-Value=1.4e-24)
Length = 811
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 332 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 374
>SB_5315| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 537
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 298 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 340
>SB_59489| Best HMM Match : RnaseH (HMM E-Value=0.0047)
Length = 567
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 171 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 213
>SB_54911| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 730
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 421 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 463
>SB_53337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 92 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 134
>SB_44436| Best HMM Match : RnaseH (HMM E-Value=0.0048)
Length = 366
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 225 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 267
>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
Length = 551
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 64 RRDNFSATGNFGFGIQEHIDLGIKYD 141
++ ++SATG+F ++EHI G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331
>SB_16804| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 921
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 399 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 441
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 836 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 878
>SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 775 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 817
>SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)
Length = 1186
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H+ V T H P EA+ K H + P + + KYD+ ++ +
Sbjct: 775 HVQVHTD--HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 817
>SB_52661| Best HMM Match : RVT_thumb (HMM E-Value=3)
Length = 378
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 291 HISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQ 163
H++V S H P EA+ K H S P + + KYD ++
Sbjct: 211 HVTV--QSDHKPLEAIFKKHISSAPPRIARMMLHIQKYDANIK 251
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 26.6 bits (56), Expect = 6.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 315 LCY*V*YHHISVGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
L Y V H++V S H P EA+ K H S + + KYDV ++ I
Sbjct: 1381 LNYYVYGRHVTV--QSDHKPLEAIFKKHISSAPSRIARMMLRIQKYDVNIKYI 1431
>SB_33781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 258 PCEAVGKSHFSCLTPSVC 205
PC VG+SH C P C
Sbjct: 6 PCIPVGRSHHPCFEPESC 23
>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 1413
Score = 26.2 bits (55), Expect = 8.0
Identities = 19/77 (24%), Positives = 30/77 (38%)
Frame = +1
Query: 13 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGIYGLDFYVVLGRP 192
+A ++L V + R NF A NFGF + + Y+ G L + L
Sbjct: 845 QASKLLTSSADVATFVARLQNFQAGKNFGFARETEVVATCNYECKRGRGRL---LELNSV 901
Query: 193 GFNVAHRRRKTGKVGFP 243
+++R GFP
Sbjct: 902 NSRKQYKKRNLPNTGFP 918
>SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 264 HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSI 157
H P EA+ K H + P + + KYD+ ++ +
Sbjct: 409 HKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYV 444
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 224 QEKWDFPTASQGRCYEVVPTEI*WYH 301
Q W+ P+ +Q Y T+ WYH
Sbjct: 388 QANWNHPSKTQANWYHPPKTQSNWYH 413
>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
Length = 1215
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 49 REYELRRDNFSATGNFGFGIQEHIDLGIK---YDHSIGIYGLDFY 174
++ ++R D N GF ++ I IK YDH+ G+Y L Y
Sbjct: 238 QDVDIREDVIRKMKNMGFDREKTIQ-AIKNKDYDHNAGVYSLLLY 281
>SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 738
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 4 RGAKAEEILERGLKVREYELRRDNFSATGNF 96
RGA A EI ++G+K + E RR+ G +
Sbjct: 159 RGANANEISKQGVKEKARETRREIVRQEGKY 189
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,734,225
Number of Sequences: 59808
Number of extensions: 209836
Number of successful extensions: 536
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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