Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10733
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   136   4e-33
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   132   5e-32
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    30   0.57 
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical ...    26   7.0  
AL023844-11|CAA19525.3|  489|Caenorhabditis elegans Hypothetical...    26   7.0  
Z82266-15|CAD36491.1|  608|Caenorhabditis elegans Hypothetical p...    26   9.3  
Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical pr...    26   9.3  
Z81128-7|CAB03400.1|  898|Caenorhabditis elegans Hypothetical pr...    26   9.3  
Z73977-2|CAA98291.2|  349|Caenorhabditis elegans Hypothetical pr...    26   9.3  
Z73968-1|CAA98230.2|  349|Caenorhabditis elegans Hypothetical pr...    26   9.3  
Z68213-9|CAD37352.1|  608|Caenorhabditis elegans Hypothetical pr...    26   9.3  
AC006722-4|AAK68419.2|  279|Caenorhabditis elegans Hypothetical ...    26   9.3  
AC006645-9|AAF39841.2|  293|Caenorhabditis elegans Nematode asta...    26   9.3  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  136 bits (329), Expect = 4e-33
 Identities = 63/87 (72%), Positives = 73/87 (83%)
 Frame = +1

Query: 1   VRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGIYGLDFYVV 180
           VRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYD SIGIYG+DFYVV
Sbjct: 81  VRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVV 140

Query: 181 LGRPGFNVAHRRRKTGKVGFPHRLTRK 261
           L R G  +A RRR  G+VG  HR+ R+
Sbjct: 141 LDRAGRRIAKRRRAPGRVGPSHRVERE 167



 Score = 31.5 bits (68), Expect = 0.19
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 234 GISPPPHKEDAMKWFQQKYDG 296
           G S    +E+++KWFQQKYDG
Sbjct: 159 GPSHRVEREESIKWFQQKYDG 179


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  132 bits (320), Expect = 5e-32
 Identities = 60/87 (68%), Positives = 72/87 (82%)
 Frame = +1

Query: 1   VRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGIYGLDFYVV 180
           VRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYD  IGIYG+DFYVV
Sbjct: 81  VRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVV 140

Query: 181 LGRPGFNVAHRRRKTGKVGFPHRLTRK 261
           L R G  V+ RRR  G++G  HR+ ++
Sbjct: 141 LNRNGVRVSKRRRAPGRIGPSHRVDKE 167



 Score = 32.3 bits (70), Expect = 0.11
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +3

Query: 225 RKSGISPPPH---KEDAMKWFQQKYDG 296
           R  G   P H   KE+ +KWFQQKYDG
Sbjct: 153 RAPGRIGPSHRVDKEETIKWFQQKYDG 179


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 1   VRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGI 156
           +R   AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 354 LREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
            T28F3.5 protein.
          Length = 1679

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 225  RKSGISPPPHKEDAMKWFQQKYDG 296
            +K+ I P P   +A+ W Q+K DG
Sbjct: 1588 QKAPIYPKPSLSEALDWVQKKIDG 1611


>AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical
           protein Y51H4A.7 protein.
          Length = 670

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 144 LNWNLWTGLLRRTWP--ARFQRSTQKA*DRKSGI 239
           LNW++  G+ RR+W   A+ Q + Q+A  +  G+
Sbjct: 619 LNWDVPNGVTRRSWSGNAKAQEAIQRAEKQVDGL 652


>AL023844-11|CAA19525.3|  489|Caenorhabditis elegans Hypothetical
           protein Y48A6B.10 protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 17/73 (23%), Positives = 30/73 (41%)
 Frame = -2

Query: 282 VGTTS*HLPCEAVGKSHFSCLTPSVCYVETWPAKYDVKVQSINSN*VIVLDTQVNVFLNT 103
           VG T+   P  A   S F CLTP+   +   P KY  + +    +        + + L +
Sbjct: 258 VGVTN---PLSAPNYSTFQCLTPNGRLLPAVPRKYPSQSEPPPRSRPAPQKPPITIMLQS 314

Query: 102 EAKITRGGEVVTP 64
            +++T    +  P
Sbjct: 315 NSRLTANNTITPP 327


>Z82266-15|CAD36491.1|  608|Caenorhabditis elegans Hypothetical
           protein C01F6.6b protein.
          Length = 608

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 107 FKNTLTWVSSTITQLEFMDWTFTSYL 184
           +KN +TW+S   T   +  W  +S+L
Sbjct: 13  WKNPITWISYLYTSFVYYLWLISSHL 38


>Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical
           protein F02H6.6 protein.
          Length = 293

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 231 FSCLTPSVCYVETWPAKYDVKVQSI 157
           F C T S  +  TWPA YD+ ++ +
Sbjct: 260 FKCNTTSGAWYNTWPA-YDIDMKEV 283


>Z81128-7|CAB03400.1|  898|Caenorhabditis elegans Hypothetical
           protein T23D8.7 protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 285 SVGTTS*HLPCEAVGKSHFSCLTPSVCYV 199
           ++  T  HLPC  VG++    L   +CYV
Sbjct: 373 NIDLTYKHLPCIEVGRTRECILPLELCYV 401


>Z73977-2|CAA98291.2|  349|Caenorhabditis elegans Hypothetical
           protein C05A2.1 protein.
          Length = 349

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 326 ILLCFAIKYDTIIFLLEPLHSIFLVRR 246
           +LLC+ IKY    FLL   H +  + R
Sbjct: 111 LLLCYKIKYPNNFFLLRGNHEVANLNR 137


>Z73968-1|CAA98230.2|  349|Caenorhabditis elegans Hypothetical
           protein C05A2.1 protein.
          Length = 349

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 326 ILLCFAIKYDTIIFLLEPLHSIFLVRR 246
           +LLC+ IKY    FLL   H +  + R
Sbjct: 111 LLLCYKIKYPNNFFLLRGNHEVANLNR 137


>Z68213-9|CAD37352.1|  608|Caenorhabditis elegans Hypothetical
           protein C01F6.6b protein.
          Length = 608

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 107 FKNTLTWVSSTITQLEFMDWTFTSYL 184
           +KN +TW+S   T   +  W  +S+L
Sbjct: 13  WKNPITWISYLYTSFVYYLWLISSHL 38


>AC006722-4|AAK68419.2|  279|Caenorhabditis elegans Hypothetical
           protein Y19D10A.6 protein.
          Length = 279

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 130 YPSQCVLEYRSQNYPWRRSCH 68
           Y +  ++ Y  QN PW+R  H
Sbjct: 210 YDANSIMHYNFQNLPWQRRDH 230


>AC006645-9|AAF39841.2|  293|Caenorhabditis elegans Nematode astacin
           protease protein 2 protein.
          Length = 293

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 130 YPSQCVLEYRSQNYPWRRSCH 68
           Y +  ++ Y  QN PW+R  H
Sbjct: 224 YDANSIMHYNFQNLPWQRRDH 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,032,286
Number of Sequences: 27780
Number of extensions: 159577
Number of successful extensions: 426
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)