Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10733
(364 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 130 4e-31
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 129 6e-31
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 129 6e-31
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 129 6e-31
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 129 6e-31
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 38 0.003
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 1.2
At5g54300.1 68418.m06763 expressed protein contains similarity t... 27 2.8
At3g55000.1 68416.m06104 tonneau family protein similar to tonne... 27 3.7
At5g56650.1 68418.m07072 IAA-amino acid hydrolase 3 (IAR3) (ILL1... 27 4.9
At2g47160.1 68415.m05889 anion exchange family protein contains ... 27 4.9
At2g33290.1 68415.m04080 SET domain-containing protein (SUVH2) i... 27 4.9
At5g46770.1 68418.m05761 expressed protein 26 6.5
At3g55160.1 68416.m06126 expressed protein 26 6.5
At3g06450.1 68416.m00746 anion exchange family protein similar t... 26 6.5
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 130 bits (313), Expect = 4e-31
Identities = 61/86 (70%), Positives = 69/86 (80%)
Frame = +1
Query: 1 VRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGIYGLDFYVV 180
VRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD S GIYG+DFYVV
Sbjct: 63 VRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVV 122
Query: 181 LGRPGFNVAHRRRKTGKVGFPHRLTR 258
L RPG+ VA RRR +VG HR+T+
Sbjct: 123 LERPGYRVARRRRCKARVGIQHRVTK 148
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 234 GISPPPHKEDAMKWFQQKYDG 296
GI K+DAMKWFQ KY+G
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEG 161
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 129 bits (311), Expect = 6e-31
Identities = 61/86 (70%), Positives = 69/86 (80%)
Frame = +1
Query: 1 VRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGIYGLDFYVV 180
VRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD S GIYG+DFYVV
Sbjct: 73 VRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVV 132
Query: 181 LGRPGFNVAHRRRKTGKVGFPHRLTR 258
L RPG+ VA RRR +VG HR+T+
Sbjct: 133 LERPGYRVARRRRCKTRVGIQHRVTK 158
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 234 GISPPPHKEDAMKWFQQKYDG 296
GI K+DAMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 129 bits (311), Expect = 6e-31
Identities = 61/86 (70%), Positives = 69/86 (80%)
Frame = +1
Query: 1 VRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGIYGLDFYVV 180
VRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD S GIYG+DFYVV
Sbjct: 63 VRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVV 122
Query: 181 LGRPGFNVAHRRRKTGKVGFPHRLTR 258
L RPG+ VA RRR +VG HR+T+
Sbjct: 123 LERPGYRVARRRRCKTRVGIQHRVTK 148
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 234 GISPPPHKEDAMKWFQQKYDG 296
GI K+DAMKWFQ KY+G
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEG 161
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 129 bits (311), Expect = 6e-31
Identities = 61/86 (70%), Positives = 69/86 (80%)
Frame = +1
Query: 1 VRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGIYGLDFYVV 180
VRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD S GIYG+DFYVV
Sbjct: 73 VRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVV 132
Query: 181 LGRPGFNVAHRRRKTGKVGFPHRLTR 258
L RPG+ VA RRR +VG HR+T+
Sbjct: 133 LERPGYRVARRRRCKTRVGIQHRVTK 158
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 234 GISPPPHKEDAMKWFQQKYDG 296
GI K+DAMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 129 bits (311), Expect = 6e-31
Identities = 61/86 (70%), Positives = 69/86 (80%)
Frame = +1
Query: 1 VRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDHSIGIYGLDFYVV 180
VRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD S GIYG+DFYVV
Sbjct: 73 VRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVV 132
Query: 181 LGRPGFNVAHRRRKTGKVGFPHRLTR 258
L RPG+ VA RRR +VG HR+T+
Sbjct: 133 LERPGYRVARRRRCKTRVGIQHRVTK 158
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 234 GISPPPHKEDAMKWFQQKYDG 296
GI K+DAMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 37.5 bits (83), Expect = 0.003
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 22 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDHSIGIYGLDFYVVLG 186
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 19 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDHSIGIYGLDFYVVL 183
E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL V L
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185
>At5g54300.1 68418.m06763 expressed protein contains similarity to
cotton fiber expressed protein 1 [Gossypium hirsutum]
gi|3264828|gb|AAC33276
Length = 326
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 329 YILLCFAIKYDTIIFLLEPLHSIFLV 252
+++ CF I YD +FLL+P + ++LV
Sbjct: 38 FVVSCFPIIYDNTVFLLKPPY-LYLV 62
>At3g55000.1 68416.m06104 tonneau family protein similar to tonneau
1b (GI:11494367) [Arabidopsis thaliana]
Length = 260
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 186 PARFQRSTQKA*DRKSGISPPPHKEDAMKWFQQKYD 293
P R S +A DR++G+S +++D W Q D
Sbjct: 183 PQRRPVSASQASDRRAGLSTSGYRKDEFNWRQGNQD 218
>At5g56650.1 68418.m07072 IAA-amino acid hydrolase 3 (IAR3) (ILL1)
identical to IAA-amino acid hydrolase 3 [Arabidopsis
thaliana] SWISS-PROT:P54969
Length = 438
Score = 26.6 bits (56), Expect = 4.9
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +1
Query: 10 AKAEEILERGLKVREY-----ELRRDNFSATGNFGFGIQEHIDL-GIKYDHSIGIYGLDF 171
AK+ E+ + +++R EL + F T F I+ +DL G+KY + I G+
Sbjct: 41 AKSPEVFDSMVRIRRKIHENPELGYEEFE-TSKF---IRSELDLIGVKYRFPVAITGIIG 96
Query: 172 YVVLGRPGF 198
Y+ G P F
Sbjct: 97 YIGTGEPPF 105
>At2g47160.1 68415.m05889 anion exchange family protein contains
some similarity to SWISS-PROT:P04919 anion transport
protein (anion exchange protein 1) [Mouse] {Mus
musculus}
Length = 704
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 332 TYILLCFAIKYDTIIFLLEPLHSIFL--VRRWGNPTF 228
TY+L+CF + + I ++ PL +FL VR++ P F
Sbjct: 552 TYLLICFGLTWIPIAGVMFPLMIMFLIPVRQYLLPRF 588
>At2g33290.1 68415.m04080 SET domain-containing protein (SUVH2)
identical to SUVH2 [Arabidopsis thaliana] GI:13517745;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH2 (SUVH2) GI:13517744
Length = 651
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Frame = +1
Query: 73 NFSATGNFGFGIQEHIDLGIKYDHSI--------GIYGL-DFYVVLGRPGFNV 204
N + +GI+ + GIKY++SI G+Y + D++ +G+ GF V
Sbjct: 295 NLGMERSMHYGIEVRVIRGIKYENSISSKVYVYDGLYKIVDWWFAVGKSGFGV 347
>At5g46770.1 68418.m05761 expressed protein
Length = 133
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 172 YVVLGRPGFNVAHRRRKTGKV 234
Y +GRPG ++AH+ +K K+
Sbjct: 59 YEKIGRPGSSLAHKMKKVKKI 79
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 50 ENMNCGVTTSPPRVILASVFKNTLTWVSSTITQLE 154
EN++C S P+ + K+ + W+ +++T+ E
Sbjct: 884 ENIDCRNQNSKPKYPVVEYIKSLIQWLDASVTEGE 918
>At3g06450.1 68416.m00746 anion exchange family protein similar to
putative Anion exchanger family members: GB:AAD39673,
GB:AAD55295 [Arabidopsis thaliana]
Length = 732
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 329 YILLCFAIKYDTIIFLLEPLHSIFL--VRRWGNPTF 228
Y+L+CF I + + +L PL +FL VR++ P F
Sbjct: 552 YLLVCFGITWVPVAGVLFPLMIMFLVPVRQYVLPNF 587
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,658,626
Number of Sequences: 28952
Number of extensions: 151940
Number of successful extensions: 426
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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