Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10732X
(497 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.024
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 31 0.073
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 0.68
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc... 28 0.90
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 2.1
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 26 2.7
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 2.7
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 26 3.6
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 3.6
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 3.6
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 25 4.8
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 25 4.8
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 6.3
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 25 8.4
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 25 8.4
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 25 8.4
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 8.4
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.1 bits (72), Expect = 0.024
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = -1
Query: 323 PSQATHSSNTHSSPIHNKSI*CSSPFSSGLPPYPTVPSHCWSSQTDAPCSTASNAVPP 150
P +T S++T+SSP+ S C++ S+ +P PT S + T P ST+S + PP
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTT--STSIP--PTGNSTTPVTPTVPPTSTSSTSTPP 317
Score = 32.3 bits (70), Expect = 0.042
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = -1
Query: 323 PSQATHSSNTHSSPIHNKSI*CSSPFSSGLPPYPTVPSHCWSSQTDAPCSTASNAVPP 150
P +T S+ T SSP+ + S C++ S+ +P PT S + T P ST+S + PP
Sbjct: 318 PPASTSSTGTSSSPLPSTSTSCTT--STSIP--PTGNSTTPVTPTVPPTSTSSTSTPP 371
Score = 28.7 bits (61), Expect = 0.51
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Frame = -1
Query: 323 PSQATHSSNTHSSPIHNKSI*CSSPFS------SGLPPYPTVPSHCWSSQTDAPCSTASN 162
P +T S+ T SSP+ + S C++ S S P PTVP S+ T S
Sbjct: 372 PPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTST 431
Query: 161 AVP 153
+VP
Sbjct: 432 SVP 434
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 31.5 bits (68), Expect = 0.073
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -1
Query: 338 YGMFDPSQATHSSNTHSSPIHNKSI*CSSPFSSGLPPY-PTVPSHCWSSQTDAPCSTASN 162
YG+ PS + S +SP + S S +S P Y PT PS+ +S + +P S + +
Sbjct: 1551 YGLTSPSYSPSSPGYSTSPAYMPS---SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1607
Query: 161 AVPPLF 144
A P +
Sbjct: 1608 ATSPSY 1613
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.3 bits (60), Expect = 0.68
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 353 MSSNRYGMFDPSQATHSSNTHSSPIHNKSI*CSSPFSSGLPPYPT-VPS 210
+SS+ F PS +T+ + T S+ + SSPF S PT VPS
Sbjct: 259 VSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVIPTSVPS 307
>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 197
Score = 27.9 bits (59), Expect = 0.90
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 73 ETNIHIVITTWSXTNSTVKAWEVLNNGGTALDAVEQGASV 192
+TN+ I + S N +++A VL N G +D+ G++V
Sbjct: 4 KTNLQISVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAV 43
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/66 (22%), Positives = 27/66 (40%)
Frame = -1
Query: 308 HSSNTHSSPIHNKSI*CSSPFSSGLPPYPTVPSHCWSSQTDAPCSTASNAVPPLFRTSQA 129
H + P H + S+P + P Y + PS +Q + S +A P+ + +
Sbjct: 218 HPPTSDMQPTHELNESPSTPTAPDFPHYNSSPSELSPTQRRSSISNGKDAPSPVLKDLTS 277
Query: 128 LTVEFV 111
T E +
Sbjct: 278 YTQEVI 283
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 26.2 bits (55), Expect = 2.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 337 MACLILLKPPTAPILIVLPFIIRASNVVLHFRPDF 233
+ CL + K PTA I I LPF +N+ H +P F
Sbjct: 520 LECLWIEKAPTASINIDLPF----TNLEWHSQPSF 550
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 311 WLEKDQTCHICC*TCIG 361
WLE+ QTC IC + IG
Sbjct: 340 WLERQQTCPICRRSVIG 356
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = -2
Query: 397 ASSPTKKECFVWSNTCLATDMACLILLKPPTAPILIVLPFIIRASNVVLH-FRPDFHHIL 221
AS P + + C+ + L PT PI+ +I + VLH FR D H
Sbjct: 48 ASKPNSNQPYPNGPVCIYPPN--IYLYAKPTMPIIQSFDVVINVAKEVLHPFRTDGRHYR 105
Query: 220 QYHH 209
H
Sbjct: 106 DSKH 109
>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 129
Score = 25.8 bits (54), Expect = 3.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 394 SSPTKKECFVWSNTCLATDMACLI 323
+S T K CF W+N+ L D+ I
Sbjct: 90 NSSTIKPCFTWANSVLYNDILIFI 113
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -1
Query: 299 NTHSSPIHNKSI*CSSPFSSGLPPYPTVPSHCWSSQTDAP 180
++H P+HN P PP P VPSH + +P
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWYPVSLPSP 173
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 24 RNIFNLCISLFNECLLRNKYSHSDYYLV 107
+++FN+ S + LLRNK+ Y LV
Sbjct: 279 KSVFNILGSFYTMRLLRNKHDGDSYELV 306
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 427 KKNPSLPLYQKNYG*NGIMNII 492
+KN +P+YQ+ +G +GI ++
Sbjct: 101 EKNKLVPIYQETFGKSGIRRVV 122
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 272 KSI*CSSPFSSGLPPYPTVPS 210
K + SS F+S LPP P VP+
Sbjct: 6 KDLPVSSTFTSNLPPDPLVPT 26
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 224 PTVPSHCWSSQTDAPCSTASNAVPPLFRTSQALTVEFVN 108
PT+PS+ + TD+P S S+ +P + T+ TV+ N
Sbjct: 169 PTIPSYANRTHTDSPTS-LSHRLPNVPDTNALNTVQANN 206
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -1
Query: 203 WSSQTDAPCSTASNAVPPL 147
W+S+T PC T A P +
Sbjct: 246 WNSKTATPCGTVGYAAPEI 264
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 289 VLPFIIRASNVVLHFRPDFHHILQYHHIV 203
+LP +IR V L+FRP ++L+ +V
Sbjct: 117 ILPALIRHLQVTLNFRPCAVYLLESQFLV 145
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.6 bits (51), Expect = 8.4
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -1
Query: 350 SSNRYGMFDPSQAT-HSSNTHSSPIHNKSI*CSSPFSSGLPPYPTVPSHCWSSQTDAPCS 174
S+N YG PS + + N + S H S P L Y T+PS C +Q DA C
Sbjct: 277 STNTYG---PSNSYGYEININESTNHVDSSYLPHPIQ--LSNYFTLPSSC--AQADAACQ 329
Query: 173 TASN 162
N
Sbjct: 330 CGDN 333
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 249 WRTTLDALIMNGRTMSIGAVGGLRRIKHAISVARHVLDHTKH 374
W T + L+ G + +V LR +K + SVA V H
Sbjct: 345 WNTRVPNLLATGADNGVWSVWDLRSLKSSSSVATPVASFKWH 386
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,683
Number of Sequences: 5004
Number of extensions: 43835
Number of successful extensions: 151
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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