Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10732X
(497 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694... 80 8e-16
04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196 50 1e-06
03_05_0219 - 22059388-22059729,22059838-22059999 45 3e-05
04_04_1628 + 34874688-34874915,34875182-34875232,34875532-348756... 34 0.073
07_03_0789 + 21529392-21529490,21529592-21529791,21529948-21530149 29 2.7
05_03_0458 + 14280953-14281866,14281964-14282912 28 3.6
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 4.8
12_01_0677 - 5774633-5774645,5774713-5775062 27 6.3
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 27 6.3
08_01_1032 + 10447474-10448030,10448784-10449813 27 6.3
04_03_0687 + 18713603-18713962,18715318-18715539,18717068-187172... 27 6.3
03_04_0083 - 17146422-17148068 27 6.3
03_06_0317 + 33097257-33097336,33098500-33098926,33100007-331000... 27 8.4
03_05_0227 + 22133847-22133951,22134648-22135047,22135452-221355... 27 8.4
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 27 8.4
>04_04_0711 -
27468045-27468264,27468831-27468935,27469431-27469489,
27469566-27470009,27470123-27470187,27470871-27471066,
27471429-27471590
Length = 416
Score = 80.2 bits (189), Expect = 8e-16
Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 TTLDALIMNGRTMSIGAVGGLRRIKHAISVARHVLDHTKHSFLVGELATQFAVEMGF-QE 431
TTLDALIM+G TM IGAV +R +K I A+ V+DHT+H+ LVGE AT FA+ MG
Sbjct: 132 TTLDALIMDGTTMEIGAVAAMRYVKDGIRAAKLVMDHTEHTLLVGEKATSFAISMGLVGP 191
Query: 432 ESITTSVSEKLWMKWHNEHHCQ 497
+++ S W W ++HCQ
Sbjct: 192 ADLSSPESIGKWTIW-RQNHCQ 212
Score = 62.1 bits (144), Expect = 2e-10
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 4/58 (6%)
Frame = +1
Query: 88 IVITTWSXTNSTVKAWEVLNNGG----TALDAVEQGASVCEDQQCDGTVGYGGSPDEN 249
+V++TW + AWEV++ G +A+DAV G S CE +CDGTVG GGSPDEN
Sbjct: 72 VVVSTWPFREAVRAAWEVVSASGGAGCSAVDAVVAGCSACEVLRCDGTVGPGGSPDEN 129
>04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196
Length = 333
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/56 (41%), Positives = 37/56 (66%)
Frame = +3
Query: 261 LDALIMNGRTMSIGAVGGLRRIKHAISVARHVLDHTKHSFLVGELATQFAVEMGFQ 428
++A IM+GR GAV G+ +K+ +S+AR V+D + HS+L + A QFA + G +
Sbjct: 80 MEASIMDGRGRRCGAVSGVSTVKNPVSLARLVMDKSPHSYLAFDGAEQFARDQGLE 135
>03_05_0219 - 22059388-22059729,22059838-22059999
Length = 167
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 261 LDALIMNGRTMSIGAVGGLRRIKHAISVARHVLDHTKHSFLVGELATQFAVE 416
++A +M+G T+ GAV GL + +A+S+AR V++ T H +L + A FA E
Sbjct: 80 MEAAVMDGNTLRCGAVSGLSTVVNAVSLARLVMEKTPHIYLAFDGAEAFARE 131
>04_04_1628 +
34874688-34874915,34875182-34875232,34875532-34875652,
34875739-34875788,34876395-34876524,34877007-34877170,
34877262-34877300,34877301-34877464,34877808-34877931,
34878002-34878103,34878208-34878297
Length = 420
Score = 33.9 bits (74), Expect = 0.073
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 264 DALIMNGRTMSIGAVGGLRRIKHAISVARHV 356
DA IM+G T + GAVG ++ +K+ I +A H+
Sbjct: 115 DASIMDGSTTTFGAVGAVQGVKNPIQIALHL 145
>07_03_0789 + 21529392-21529490,21529592-21529791,21529948-21530149
Length = 166
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 428 LKAHFYCKLGGKLTN*KGMFCVVQYMSSN 342
L H + +GG L G+FC+V Y S+N
Sbjct: 127 LPRHHFLSIGGILCFVHGLFCLVYYASAN 155
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = -1
Query: 311 THSSNTHSSPIHNKSI*CSSPFSSGLPPYPTVPSHCWSSQTDAPCS 174
T S ++H +P S +SP +S LPP PT P SS+ AP S
Sbjct: 82 TLSCSSHPTPPPPPSP-TTSPSASSLPPVPT-PRSASSSKCSAPTS 125
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.9 bits (59), Expect = 4.8
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -1
Query: 356 YMSSNRYGMFDPSQATHSS-NTHSSPIHNKSI*CSSPFSSGLPPYPTVPSHCWSSQT--D 186
Y + G PS A+ +S +T S ++ S CS+P S PT P +S T +
Sbjct: 379 YPPTPSVGDVPPSPASGTSPSTPGSGGYSPSTPCSAPPSPSSGTSPTTPGGGYSPSTPCN 438
Query: 185 APCSTASNAVP 153
AP S +S+ P
Sbjct: 439 APPSPSSDTSP 449
>12_01_0677 - 5774633-5774645,5774713-5775062
Length = 120
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 352 CLATDMACLILLKPPTAP---ILIVLPFIIRASNVVLHFRP 239
C+ + L L+ PP P +L++LP + A VVL F P
Sbjct: 66 CVTVSLLVLPLILPPLPPPPTLLLLLPVCLLALLVVLAFMP 106
>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
Length = 1032
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 300 GAVGGLRRIKHAISVARHVLDHTKHSFLVGELATQFAVE 416
G + GL AI ARH+ DHT++ ++ +A E
Sbjct: 806 GLLAGLEEWNMAIKCARHIDDHTRNIKVIEVVAENLGEE 844
>08_01_1032 + 10447474-10448030,10448784-10449813
Length = 528
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 305 SSNTHSSPIHNKSI*CSSPFSSGLPP 228
+S SSP H S+ SSP S GLPP
Sbjct: 69 ASTAASSPKHALSLLLSSPPSPGLPP 94
>04_03_0687 +
18713603-18713962,18715318-18715539,18717068-18717256,
18717419-18717612,18718193-18718328
Length = 366
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 12 NEPNRNIFNLCISLFNE-CLLRNKYSHSDYYL 104
NEP++ +FN C+ L C+++ + YYL
Sbjct: 265 NEPSKCLFNDCVHLGERGCVVKGDWERYPYYL 296
>03_04_0083 - 17146422-17148068
Length = 548
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 246 KWRTTLDALIMNGRTMSIGAVGGLRRIKHAISVARHV 356
K + LDA++ GR +S G V GLR ++ + A V
Sbjct: 379 KAQAELDAVVGRGRAVSDGDVAGLRYLQCVVKEALRV 415
>03_06_0317 +
33097257-33097336,33098500-33098926,33100007-33100078,
33100490-33100600,33100973-33101173,33102157-33102222
Length = 318
Score = 27.1 bits (57), Expect = 8.4
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +1
Query: 127 KAWEVLNNGGTALDAVEQGASVCEDQQCDGTV 222
+ W++ N G ++ V++ + D++ DG V
Sbjct: 15 RRWDLTNKGAESIPMVKEAVEMSTDEESDGVV 46
>03_05_0227 +
22133847-22133951,22134648-22135047,22135452-22135561,
22135869-22135955
Length = 233
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Frame = +2
Query: 311 WLEKDQTCHIC----C*TCIGPHKTF 376
W+E+ Q C +C C+ PH TF
Sbjct: 193 WMERSQACPVCSKKKLVACVNPHITF 218
>03_01_0016 +
131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 241 PDF-HHILQYHHIVGLHRPMLPALRHLM 161
PD+ +HILQ H+ G H M+ A+ +
Sbjct: 730 PDYCNHILQISHLCGAHTEMVSAIERAL 757
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,492,965
Number of Sequences: 37544
Number of extensions: 283068
Number of successful extensions: 882
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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