Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10731
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 167 9e-43
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 167 9e-43
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 39 4e-04
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 27 1.8
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 27 1.8
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 26 3.2
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 26 4.2
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 26 4.2
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 7.3
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 9.6
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 167 bits (406), Expect = 9e-43
Identities = 81/140 (57%), Positives = 103/140 (73%)
Frame = +2
Query: 14 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEHRLLQYKLQEPILLLGKEKFSMV 193
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+ +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 194 DIRVTSQGWWSCSTSLRYQTTISKALIAFYQKYVDEASKKEITDILVQYDRSLLVADPRR 373
DIRV G S + ISKA++A+YQK+VDE SK E+ L+ YDR+LLVADPRR
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120
Query: 374 CEPKKFGGPGARARYQKSYR 433
EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 167 bits (406), Expect = 9e-43
Identities = 81/140 (57%), Positives = 103/140 (73%)
Frame = +2
Query: 14 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEHRLLQYKLQEPILLLGKEKFSMV 193
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+ +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 194 DIRVTSQGWWSCSTSLRYQTTISKALIAFYQKYVDEASKKEITDILVQYDRSLLVADPRR 373
DIRV G S + ISKA++A+YQK+VDE SK E+ L+ YDR+LLVADPRR
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120
Query: 374 CEPKKFGGPGARARYQKSYR 433
EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 39.1 bits (87), Expect = 4e-04
Identities = 35/128 (27%), Positives = 54/128 (42%)
Frame = +2
Query: 35 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEHRLLQYKLQEPILLLGKEKFSMVDIRVTSQ 214
G++K++ A G G VNG P D+ R++ K L + + ++ T
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70
Query: 215 GWWSCSTSLRYQTTISKALIAFYQKYVDEASKKEITDILVQYDRSLLVADPRRCEPKKFG 394
G S ISK+LI + E S K++ D ++ D R+ E KK G
Sbjct: 71 GGGPTGQSGAVHAAISKSLI------LQEPSLKQVIK-----DTHCVLNDKRKVERKKTG 119
Query: 395 GPGARARY 418
P AR +Y
Sbjct: 120 QPKARKKY 127
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 217 VVVM*HKFTLSDNYFEGSDRILPEICRRSLKEGNHR 324
V+V KF D Y +G+ I+P IC+ N++
Sbjct: 766 VIVKHGKFKKMDAYVKGAPEIMPSICKPESFPANYQ 801
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 414 DTRNLTVKPSTKPSGGIVAAVCCH 485
D N+ VKP+ P+ + +CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 178 FLAEQKDRFLKFVLQQSVLNQV-QWTPVYTQHSMTTLAIR 62
F A + D + VLNQ+ WTPV +HS+ +R
Sbjct: 278 FFAAKSDTPVNLEYISVVLNQILDWTPVELRHSIFFCCLR 317
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 122 EHRLLQYKLQEPILLLGKEKFSMVDIRVTSQGWWSC 229
++ LL +L +P +L ++ VD+RV + W C
Sbjct: 608 DNLLLTARLAKPDMLNYAKRAKKVDVRVLKEKLWKC 643
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 133 AAVQTSGTYPFARQGKILYGRHQSDQSRVVVM 228
A V+ S T G I+YG SD+ ++VV+
Sbjct: 787 ATVKVSSTESAVIFGNIVYGGKASDEDKIVVL 818
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 101 RLHAAFHDHACNTQLRWRFS 42
RLH+ F++H C + L+ FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 140 TAAVCAQPSPMDARLHAAFHDHACNTQLR 54
T +V + P AR AA H +A +TQLR
Sbjct: 375 TPSVKPEMFPKTARPFAAIHANASSTQLR 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,843
Number of Sequences: 5004
Number of extensions: 41736
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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