Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10731
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 182 1e-46
11_01_0155 - 1287003-1287452 182 1e-46
04_04_0028 - 22243272-22243577,22244564-22244713,22244919-222456... 28 4.2
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 28 4.2
06_03_0062 + 16116893-16117029,16117472-16117760 28 5.6
03_02_0326 + 7474352-7474448,7474913-7474977,7475105-7475191,747... 28 5.6
11_06_0598 - 25391923-25393197 27 7.4
05_03_0424 - 13795721-13795900,13796134-13796202,13796260-137963... 27 7.4
02_05_0156 + 26341904-26342801,26343469-26344148 27 7.4
11_06_0446 - 23703088-23703681 27 9.8
05_03_0458 + 14280953-14281866,14281964-14282912 27 9.8
>12_01_0152 - 1168928-1169377
Length = 149
Score = 182 bits (444), Expect = 1e-46
Identities = 84/143 (58%), Positives = 107/143 (74%)
Frame = +2
Query: 5 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEHRLLQYKLQEPILLLGKEKF 184
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 185 SMVDIRVTSQGWWSCSTSLRYQTTISKALIAFYQKYVDEASKKEITDILVQYDRSLLVAD 364
+D+R+ +G S + I+KAL+A+YQKYVDEASKKE+ DI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 365 PRRCEPKKFGGPGARARYQKSYR 433
PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 182 bits (444), Expect = 1e-46
Identities = 84/143 (58%), Positives = 107/143 (74%)
Frame = +2
Query: 5 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEHRLLQYKLQEPILLLGKEKF 184
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 185 SMVDIRVTSQGWWSCSTSLRYQTTISKALIAFYQKYVDEASKKEITDILVQYDRSLLVAD 364
+D+R+ +G S + I+KAL+A+YQKYVDEASKKE+ DI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 365 PRRCEPKKFGGPGARARYQKSYR 433
PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>04_04_0028 -
22243272-22243577,22244564-22244713,22244919-22245656,
22247233-22247331,22247541-22247933,22248806-22248961
Length = 613
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 36 DVRKPPPQLRIASVVMECCV*TGV--HWTWLSTDCCSTNFRNLSFCSARKNSLWS 194
D+R P +A +++ CCV T + H T LST F + K +LWS
Sbjct: 412 DLRVDRPMSHLAYLLISCCVITKIELHATKLSTFIYEGEFVPIVLNHTSKLNLWS 466
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 109 WTPVYTQHSMTTLAIRNCGGGFLTSEYLD 23
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>06_03_0062 + 16116893-16117029,16117472-16117760
Length = 141
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 110 MDARLHAAFHDHA--CNTQLRWRFSYVRILGLPGW 12
+DARL A +HA N + RWR LG GW
Sbjct: 26 LDARLWAVESEHARVVNPEQRWRARSTGWLGKKGW 60
>03_02_0326 +
7474352-7474448,7474913-7474977,7475105-7475191,
7475393-7475440,7476086-7476142,7476588-7476687,
7476875-7477185,7477298-7477667,7478745-7478876,
7479362-7479575,7479650-7479710,7480098-7480292
Length = 578
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 145 TSGTYPFARQGKILYGRHQSDQSRVVVM*HKFTLSDN 255
TSG FAR GK L G QS Q V+ ++ S+N
Sbjct: 197 TSGKVSFARLGKCLTGLIQSTQVPTVISLTQYHKSEN 233
>11_06_0598 - 25391923-25393197
Length = 424
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 414 LARAPGPPNFLGSQRRGSATSKLLSY*TRMSVISFFEASSTYFW*NAIRAF 262
LA PP L S TS L + T + ++ S+TY +AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304
>05_03_0424 -
13795721-13795900,13796134-13796202,13796260-13796385,
13797224-13798166,13798263-13799248
Length = 767
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 221 WSCSTSLRYQTTISKALIAFYQKYVDEASKKEITDILVQYD 343
WS S + + + AL+ Y+K + A + + D ++ D
Sbjct: 279 WSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKD 319
>02_05_0156 + 26341904-26342801,26343469-26344148
Length = 525
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 452 WFR*RLNGKISGIWHGH 402
WFR R G I GIW+ H
Sbjct: 155 WFRGRRRGLIMGIWNAH 171
>11_06_0446 - 23703088-23703681
Length = 197
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 164 LLGKEKFSMVDIRVTSQGWWSCSTS 238
LLGKEK RVT W+ CST+
Sbjct: 86 LLGKEKQWFYANRVTINIWYKCSTA 110
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 221 WSCSTSLRYQTTISKALIAFYQKYVDEASKKEITDILVQYD 343
WS S + + + AL+ Y+K + A + + D ++ D
Sbjct: 255 WSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKD 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,490,543
Number of Sequences: 37544
Number of extensions: 312212
Number of successful extensions: 842
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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