Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10731
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             141   4e-34
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        34   0.066
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   29   3.3  
SB_5716| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_1117| Best HMM Match : NOA36 (HMM E-Value=4.6)                      28   5.7  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  141 bits (341), Expect = 4e-34
 Identities = 69/97 (71%), Positives = 78/97 (80%)
 Frame = +2

Query: 143 KLQEPILLLGKEKFSMVDIRVTSQGWWSCSTSLRYQTTISKALIAFYQKYVDEASKKEIT 322
           K++EPILLLGKE+F  VDIRV  +G    S     +  ISK+L+A+YQKYVDE SKKEI 
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70

Query: 323 DILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 433
           DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 71  DILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 34.3 bits (75), Expect = 0.066
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +2

Query: 236 SLRYQTTISKALIAFYQKYVDEASKKEITDILVQYDRSLLVADPRRCE 379
           +++++T +   L AF QKY+D   +KE +   +Q+ + +LV+  R CE
Sbjct: 43  AVKHKTHVDTVL-AFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +2

Query: 47  TATAVAYCKRGHGMLRVNGRPLDLVEHRLLQYKLQEPILLLGKEKFSMVDIRVTSQGWWS 226
           T   +A   R   +LR  G    +V     Q K         ++   +   R  +   WS
Sbjct: 97  TLANIAMASRARNILRRCGGIRKMVNLLNYQDKSWRKQKSQEQKNLDLEVARSAALALWS 156

Query: 227 CSTSLRYQTTISKA 268
           CSTS+R +T+I KA
Sbjct: 157 CSTSMRNRTSIFKA 170


>SB_5716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = -2

Query: 169 EQKDRFLKFVLQQSVLNQVQWTPVYTQHSMTTLAIRNC 56
           E++ R ++++++  V +   WT +  QH+  T  + +C
Sbjct: 28  EEQKRVIRYLVELDVTDDPAWTCLVNQHTWLTKLLTSC 65


>SB_1117| Best HMM Match : NOA36 (HMM E-Value=4.6)
          Length = 261

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = -2

Query: 169 EQKDRFLKFVLQQSVLNQVQWTPVYTQHSMTTLAIRNC 56
           E++ R ++++++  V +   WT +  QH+  T  + +C
Sbjct: 126 EEQKRVIRYLVELDVTDDPAWTCLVNQHTWLTKLLTSC 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,125,662
Number of Sequences: 59808
Number of extensions: 337958
Number of successful extensions: 734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)