Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10731
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   194   4e-50
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   186   1e-47
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           185   1e-47
At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containi...    29   1.5  
At4g11090.1 68417.m01801 expressed protein other hypothetical pr...    28   3.5  
At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s...    28   4.7  
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea...    27   6.2  
At2g23160.1 68415.m02767 F-box family protein contains Pfam PF00...    27   6.2  
At1g66000.1 68414.m07490 expressed protein contains Pfam PF04510...    27   8.2  

>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  194 bits (472), Expect = 4e-50
 Identities = 87/139 (62%), Positives = 115/139 (82%)
 Frame = +2

Query: 17  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEHRLLQYKLQEPILLLGKEKFSMVD 196
           ++VQ FGRKKTATAV YCKRG GM+++NG P++L +  +L++K+ EP+LLLGK +F+ VD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 197 IRVTSQGWWSCSTSLRYQTTISKALIAFYQKYVDEASKKEITDILVQYDRSLLVADPRRC 376
           +R+ + G  + S     + +I+KAL+A+YQKYVDE SKKEI DIL++YDR+LLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 377 EPKKFGGPGARARYQKSYR 433
           E KKFGGPGARAR+QKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  186 bits (452), Expect = 1e-47
 Identities = 85/139 (61%), Positives = 112/139 (80%)
 Frame = +2

Query: 17  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEHRLLQYKLQEPILLLGKEKFSMVD 196
           ++VQ FGRKKTA AV +CKRG G++++NG P++L +  +L++K+ EPILLLGK +F+ V+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 197 IRVTSQGWWSCSTSLRYQTTISKALIAFYQKYVDEASKKEITDILVQYDRSLLVADPRRC 376
           +R+   G    S     + +I+KAL+A+YQKYVDE SKKEI DILV+YDR+LLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 377 EPKKFGGPGARARYQKSYR 433
           EPKKFGG GAR+RYQKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  185 bits (451), Expect = 1e-47
 Identities = 84/139 (60%), Positives = 112/139 (80%)
 Frame = +2

Query: 17  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEHRLLQYKLQEPILLLGKEKFSMVD 196
           ++VQ FGRKKTA AV +CKRG G++++NG P++L +  +L++K+ EP+LLLGK +F+ V+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 197 IRVTSQGWWSCSTSLRYQTTISKALIAFYQKYVDEASKKEITDILVQYDRSLLVADPRRC 376
           +R+   G    S     + +I+KAL+A+YQKYVDE SKKEI DILV+YDR+LLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 377 EPKKFGGPGARARYQKSYR 433
           EPKKFGG GAR+RYQKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146


>At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 477

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 233 TSLRYQTTISKALIAFYQKYVDEAS-KKEITDILVQYDRSLLVADPRRCEPKKF 391
           ++LR+ TT+S A   + Q     ++ +KE+    VQ D S +    RRC+P +F
Sbjct: 22  SALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDSSCINEVLRRCDPNQF 75


>At4g11090.1 68417.m01801 expressed protein other hypothetical
           proteins - Arabidopsis thaliana
          Length = 432

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 105 VHWTWLSTDCCSTNFRNLSFCSARKNSLWS 194
           ++W W   DC    F +L F    +N  W+
Sbjct: 121 LNWKWKPNDCSLPRFDSLRFLQLMRNKSWA 150


>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
           similar to exostose-related protein 2, Homo sapiens,
           PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
           [GI:10443633]
          Length = 334

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 206 TSQGWWSCSTSLRYQTTISKALIAFYQKYV 295
           T  GWWS   S  Y   +SKA   F++KY+
Sbjct: 211 TYSGWWSVWWSGTYSMVLSKAAF-FHKKYL 239


>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
            family protein similar to CPY (GI:3096961) {Chironomus
            thummi}; contains Pfam PF00400: WD domain, G-beta repeat
            (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
          Length = 2471

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 224  SCSTSLRYQTTISKALIAFYQKYVDEASKKEITDILVQYDRSLL 355
            SC    R+Q  +  AL  F+Q++   AS      IL  Y+R LL
Sbjct: 1563 SCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLL 1606


>At2g23160.1 68415.m02767 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 395

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = +2

Query: 137 QYKLQEPILLLGKEKFSMVDIRVTSQGWWSCSTSLRYQTTISKALIAFYQKYVDEASKKE 316
           Q+K+     L G     ++ +   +  W +   SLRY+       I     Y+ E S  +
Sbjct: 165 QFKILFMAYLSGDRDHKILTVGTGNMKWRTIRCSLRYEIVSEGVSINGVLYYLGETSAWD 224

Query: 317 ITDILVQYDRSLLVADPR 370
             D  ++YD +++  D R
Sbjct: 225 NKDYDLKYDYAIVCFDIR 242


>At1g66000.1 68414.m07490 expressed protein contains Pfam PF04510 :
           Family of unknown function (DUF577); common family
           comprised of At4g09440, At1g66000, At1g66060
          Length = 315

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 191 VDIRVTSQGWWSCSTSLRY 247
           V+I V  Q WW C+T  R+
Sbjct: 261 VEIAVVEQLWWYCTTEFRF 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,837,387
Number of Sequences: 28952
Number of extensions: 231644
Number of successful extensions: 654
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)