Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10723
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.50 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.66 
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    28   1.2  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.0  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   2.0  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   4.7  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   8.1  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = -3

Query: 406 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEA 260
           TY+   I SS+ L+   S L++++S  +ASSS  PI   SSS VS   A
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -3

Query: 472 TSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 293
           TS + TSL ++A               ++ SS+ +    S +L ++S    SSS      
Sbjct: 7   TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66

Query: 292 KSSSWVSPSEA 260
            SSS+ SP+ +
Sbjct: 67  SSSSFTSPASS 77


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -3

Query: 382 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKATEREEAAP 230
           S +PL   +   LLA    +ASS+   I+  SS   SPS++ ++ +E ++P
Sbjct: 66  SQSPL-SHKDASLLATMPSVASSNPSLISSGSSQTGSPSQSLSSNKEPSSP 115


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 336 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 431
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 23/74 (31%), Positives = 28/74 (37%)
 Frame = +3

Query: 147 WKR*LHSQNVYRSSEK*SREKRCPLGIFGAASSRSVALASDGETHEELLKAIGFPDDDAI 326
           W R   S      S+  SR+K  P      ASS    L+S  ET       I  PD+ A 
Sbjct: 104 WVRKTASNTSVAGSDSVSRDK-IPFSASSRASSTKSTLSSVKETDFVTETLILSPDNQAP 162

Query: 327 RTEFASKSRDLRSI 368
           R  F  K   +  I
Sbjct: 163 RMSFVGKPNSVAEI 176


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +2

Query: 425 RREFCSRFQGRLQFGRPKH*FLEEYSRSKSINDWVEENTNNRIKDLVNPDSL 580
           R  F  ++  ++ F   K+ F+  Y R++ +ND+ +E  N  +KD++   S+
Sbjct: 357 RTSFPEKYAIKVDFEFLKNVFINTYDRTRLVNDY-DEIINFTLKDVLGERSV 407


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -1

Query: 192 FHYFGKHSGCEVIVS---IFEYIREICDGCHCRDGDSKQTNDCLH 67
           F  FG+H  CEV+++   +  +  EI  G H  D D  +    LH
Sbjct: 59  FWRFGRHKSCEVVLNGPRVSNFHFEIYQG-HRNDSDESENVVFLH 102


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = -1

Query: 309 GSR*LSKAL-HGFHHQKLKQ--LSERRQHRKCREDNA--FPWIIFHYFGKHSGCEVI 154
           G++ + KA+    +H+K K   L +   H+  +E +   F +I+F YF K S  +VI
Sbjct: 68  GNKGIKKAMKEADYHRKFKSNYLLKSYTHQLVKEADGSEFVYILFPYFAKGSVAQVI 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,547
Number of Sequences: 5004
Number of extensions: 52721
Number of successful extensions: 199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)