Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10723
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      58   5e-09
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      56   4e-08
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      54   9e-08
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)             28   8.6  

>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 24/68 (35%), Positives = 38/68 (55%)
 Frame = +2

Query: 497 YSRSKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDF 676
           +   K +N WV + T   IK+L+    ++S T  ++VNA+YFKG W  +F E  T    F
Sbjct: 95  FDARKEVNAWVHQQTKGNIKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAF 154

Query: 677 YVSKTKPS 700
           +V ++  S
Sbjct: 155 FVPESHES 162



 Score = 31.9 bits (69), Expect = 0.53
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = +3

Query: 252 VALASDGETHEELLKAIGFPDDDAIRTEFASKSRD---LRSIKGV-ELKMANKVYVHDGG 419
           V L S G T  ++    G+ + +   T    K      L S  G  E+++ NK++ HD  
Sbjct: 8   VYLGSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIWGHDEF 67

Query: 420 KLDENFAVVSRDVFNSDVQNIDF 488
           ++ E F   +R+ ++S++  +DF
Sbjct: 68  EILEEFLHGTREFYHSEMAQVDF 90


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 24/56 (42%), Positives = 31/56 (55%)
 Frame = +2

Query: 509 KSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDF 676
           K +N WVEE T  +I DL+ P   +  T   LVNAIYFKG W   F +  +   +F
Sbjct: 94  KHVNQWVEERTKKKICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEF 149


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 25/63 (39%), Positives = 36/63 (57%)
 Frame = +2

Query: 512 SINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKT 691
           ++N WVE+ T ++IK+L+     +  T   LVNA+YFKG+W   F+   T    F   KT
Sbjct: 132 TVNRWVEQKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKF---KT 188

Query: 692 KPS 700
            PS
Sbjct: 189 TPS 191



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/84 (23%), Positives = 44/84 (52%)
 Frame = +3

Query: 258 LASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 437
           L + G T  ++ K   FP D   +     ++ +  +  G ++ MAN+++   G ++ E F
Sbjct: 46  LGARGNTATQMTKTFHFPTDVPEKFHDFLQALNASNSDGNQILMANRLFAQMGFEILEEF 105

Query: 438 AVVSRDVFNSDVQNIDFSKNTVAA 509
              S++ F++++  +D+ KN+  A
Sbjct: 106 KKASKESFSAEMALVDYVKNSNGA 129


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 114 CHCRDGDSKQTNDCL 70
           CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350


>SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)
          Length = 187

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 234 AASSRSVALASDGETHEELLKAIGF 308
           A  SRS +++SDG+  E+LLK + F
Sbjct: 39  ATCSRSASVSSDGDKTEKLLKVLQF 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,402,003
Number of Sequences: 59808
Number of extensions: 383286
Number of successful extensions: 1293
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)