Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10722
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   139   2e-34
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   133   8e-33
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    31   0.083
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.34 
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    28   0.59 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    28   0.59 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   4.1  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   7.2  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    24   7.2  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    24   9.5  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    24   9.5  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   9.5  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  139 bits (336), Expect = 2e-34
 Identities = 61/89 (68%), Positives = 74/89 (83%)
 Frame = +2

Query: 2   TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPM 181
           T+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  
Sbjct: 2   TQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSE 61

Query: 182 FQLPKLYAKLHYCVSCAIHSKVVRTDRRK 268
           + +PKLY KL YCVSCAIHS+VVR   R+
Sbjct: 62  YTIPKLYIKLQYCVSCAIHSRVVRVRSRE 90



 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 256 RSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 339
           RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 87  RSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  133 bits (322), Expect = 8e-33
 Identities = 58/89 (65%), Positives = 73/89 (82%)
 Frame = +2

Query: 2   TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPM 181
           T+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  
Sbjct: 2   TQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSE 61

Query: 182 FQLPKLYAKLHYCVSCAIHSKVVRTDRRK 268
           + +PK+Y KL YCVSCAIH++VVR   R+
Sbjct: 62  YAIPKIYVKLQYCVSCAIHARVVRVRSRE 90



 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 256 RSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 339
           RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 87  RSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 30.7 bits (66), Expect = 0.083
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +2

Query: 92  KDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRTDR--R 265
           +DK   K + R +     +   N  ++Y +F++PK        +   +HS VV+ +R   
Sbjct: 60  EDKDTWKRLQREVTILRQLHHPNIITLYQVFRVPKYTVLALEYMDTDLHSMVVKHNRLDE 119

Query: 266 KTEESVLLPRVTSLGTCHVHR 328
            T   +    V ++  CH+HR
Sbjct: 120 CTTRKIFRQIVHAIDYCHLHR 140


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 80  RCVPKDKAIKKFVIRNIVEAAAVRDI 157
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -2

Query: 306 REVTLGRSTDSSVFLRSVLTTLLWMAH 226
           R  TL   T   VFLR VL  LLW  H
Sbjct: 369 RNNTLPLLTTKRVFLRGVLEELLWFIH 395


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -1

Query: 139 RFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASS 20
           + +DV + +L + + L   P+A+C  +S ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 194  KLYAKLHYCVSCAIHSKVVRTDRRKTEESVL 286
            +L+ +L  CV   +H+K+  TD +   E +L
Sbjct: 3062 ELFYRLSNCVEKVLHNKISITDLKTEYEEIL 3092


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 304 GSYSWEEYGFFCLSSICP 251
           GSY W+     CL  +CP
Sbjct: 297 GSYKWQGLQCSCLQWVCP 314


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 257 DRRKTEESVLLPRVTSLGT 313
           DR +TE SVL  RVT +G+
Sbjct: 5   DRSRTEISVLSDRVTDVGS 23


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 145 RRRFYDVPNHELFDSLVLWHAPRA 74
           R  F +V N  L +S+ ++H PRA
Sbjct: 363 RNAFLNVANKYLPNSVCIYHVPRA 386


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 277 IRTPPKSNFPRDMSR 321
           IRTP KS FP+D ++
Sbjct: 157 IRTPKKSYFPKDHAK 171


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 74   CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 169
            C R  P  KA+    +RN +E A    I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,531
Number of Sequences: 5004
Number of extensions: 23480
Number of successful extensions: 65
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)