Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10722
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   138   1e-33
09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280           29   1.3  
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399...    27   4.0  
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832     27   7.0  
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    27   7.0  
04_01_0268 - 3585907-3588086,3590167-3590326                           27   7.0  
05_03_0038 + 7612866-7613132,7615691-7616608                           26   9.2  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  138 bits (335), Expect = 1e-33
 Identities = 59/89 (66%), Positives = 74/89 (83%)
 Frame = +2

Query: 2   TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPM 181
           T KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+  
Sbjct: 2   TFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDG 61

Query: 182 FQLPKLYAKLHYCVSCAIHSKVVRTDRRK 268
           + LPKLYAK+H+CVSCAIH+ +VR   R+
Sbjct: 62  YVLPKLYAKVHHCVSCAIHAHIVRVRSRE 90


>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
          Length = 422

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 208 APLLRVMRHPQQSCQDRSKKDRRIRTPPK 294
           +PL R++R     C   +KK+RR+R P K
Sbjct: 317 SPLFRILRTLFGLCSAEAKKNRRLRNPAK 345


>08_02_1601 -
           28138206-28138597,28138928-28139054,28139150-28139914,
           28140714-28140929,28141433-28141903
          Length = 656

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 166 GIVNISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFN--VTTSMLGASSIT 14
           GI  + D   +YD  +  LF+ L+    P A  +SH+F+  V T  +  S+ T
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491


>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
          Length = 433

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +2

Query: 2   TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 151
           T  RR    A  G G   AV C +CA   P + A+   +   +  A   R
Sbjct: 78  TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 148 DRRRFYDVPNHELFD 104
           DR  FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368


>04_01_0268 - 3585907-3588086,3590167-3590326
          Length = 779

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 255 VLTTLLWMAHDTQ*WSLAYNLGSWNIGYT 169
           V   +LW+A+    W+  Y LGS ++G T
Sbjct: 96  VRALVLWLAYQLGGWAGTYALGSMSLGRT 124


>05_03_0038 + 7612866-7613132,7615691-7616608
          Length = 394

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 208 APLLRVMRHPQQSCQDRSKKDRRIRTPPK 294
           +PL R++R     C   +KK+RR+R   K
Sbjct: 305 SPLFRILRSLFGLCSAEAKKNRRLRNSAK 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,871,146
Number of Sequences: 37544
Number of extensions: 190280
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)