Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10711
         (493 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    28   0.053
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    28   0.053
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    28   0.053
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    28   0.053
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.1  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   6.1  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   6.1  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   6.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   6.1  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   8.0  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 0.053
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 414  IFLLEPLHSIFLCEAVGKSHFSCLTPSVCYVETWPAKY 301
            IFL+    S F+   +    F C+ P + Y+ + P+ Y
Sbjct: 1006 IFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 0.053
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 414  IFLLEPLHSIFLCEAVGKSHFSCLTPSVCYVETWPAKY 301
            IFL+    S F+   +    F C+ P + Y+ + P+ Y
Sbjct: 1006 IFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 0.053
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 414  IFLLEPLHSIFLCEAVGKSHFSCLTPSVCYVETWPAKY 301
            IFL+    S F+   +    F C+ P + Y+ + P+ Y
Sbjct: 1006 IFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 0.053
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 414  IFLLEPLHSIFLCEAVGKSHFSCLTPSVCYVETWPAKY 301
            IFL+    S F+   +    F C+ P + Y+ + P+ Y
Sbjct: 1006 IFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 345 LTPSVCYVETWPAKYDVKVQSINSN 271
           LT +VC+V    A +  K  SIN N
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSINEN 214


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 345 LTPSVCYVETWPAKYDVKVQSINSN 271
           LT +VC+V    A +  K  SIN N
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSINEN 214


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 221 QNYPWRRSCHAA 186
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 221 QNYPWRRSCHAA 186
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 319 FNVAHRRRKTGKVGFPHRLTKEDAMKWFQQK 411
           FN    RR+  ++    RLT+     WFQ +
Sbjct: 204 FNKYLTRRRRIEIAESLRLTERQIKIWFQNR 234


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +1

Query: 208 HG*FWLRYSRTH*LGYK--YDPSIGIYGL 288
           +G FW+ Y  T   GYK  Y  + G+ G+
Sbjct: 382 NGGFWVGYEDTDTAGYKASYVKAKGLGGI 410


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 319 FNVAHRRRKTGKVGFPHRLTKEDAMKWFQQK 411
           FN    RR+  ++    RLT+     WFQ +
Sbjct: 204 FNKYLTRRRRIEIAESLRLTERQIKIWFQNR 234


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 221 QNYPWRRSCHAA 186
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 319 FNVAHRRRKTGKVGFPHRLTKEDAMKWFQQK 411
           FN    RR+  ++    RLT+     WFQ +
Sbjct: 204 FNKYLTRRRRIEIAESLRLTERQIKIWFQNR 234


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 253 YKYDPSIGIYG 285
           Y YDP++  YG
Sbjct: 67  YPYDPALAAYG 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,257
Number of Sequences: 336
Number of extensions: 2676
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)