Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10711
(493 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 155 3e-39
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 155 3e-39
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 27 2.0
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 26 3.5
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,... 25 6.2
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 6.2
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 25 6.2
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 8.2
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 155 bits (376), Expect = 3e-39
Identities = 74/91 (81%), Positives = 80/91 (87%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREY 181
LTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEKIA H TVRG KAEEILERGLKV+EY
Sbjct: 30 LTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEY 89
Query: 182 ELRRDNFSATGNFGFGIQEHIDLGTSTIPQL 274
EL++ NFSATGNFGFGIQEHIDLG P +
Sbjct: 90 ELKKRNFSATGNFGFGIQEHIDLGIKYDPSI 120
Score = 89.0 bits (211), Expect = 3e-19
Identities = 35/57 (61%), Positives = 45/57 (78%)
Frame = +1
Query: 247 LGYKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYD 417
LG KYDPSIGIYG+DFYVV+ RPG VA R+ + G+VG+ H++ ED + WF+QKYD
Sbjct: 112 LGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYD 168
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 155 bits (376), Expect = 3e-39
Identities = 74/91 (81%), Positives = 80/91 (87%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREY 181
LTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEKIA H TVRG KAEEILERGLKV+EY
Sbjct: 30 LTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEY 89
Query: 182 ELRRDNFSATGNFGFGIQEHIDLGTSTIPQL 274
EL++ NFSATGNFGFGIQEHIDLG P +
Sbjct: 90 ELKKRNFSATGNFGFGIQEHIDLGIKYDPSI 120
Score = 89.0 bits (211), Expect = 3e-19
Identities = 35/57 (61%), Positives = 45/57 (78%)
Frame = +1
Query: 247 LGYKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYD 417
LG KYDPSIGIYG+DFYVV+ RPG VA R+ + G+VG+ H++ ED + WF+QKYD
Sbjct: 112 LGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYD 168
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 92 GYQKTALYT*PWKIQAVVL*VAPTPWRHES 3
G +Y W I A +L V P PWR+ S
Sbjct: 121 GLYSHPIYPLLWVITAFILIVFPFPWRYRS 150
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.8 bits (54), Expect = 3.5
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 149 ILERGLKVREYELRR--DNFSATGNFGFGIQEHIDLGTSTIPQLEFMDWTFTSYLAGQVS 322
I+ + LK+R RR N S GI HID G +T+ + FTS+ G V
Sbjct: 4 IVWKPLKIRLPVWRRYQSNISINSIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHF-GNVD 62
Query: 323 T 325
T
Sbjct: 63 T 63
>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 6.2
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = -2
Query: 321 ETWPAKYDVKVQSINSN*GIVLVPKSMCS*IPK 223
E++ +DV ++S+NSN I ++PK + + IP+
Sbjct: 433 ESYNDTFDV-IESVNSNTKIPILPKWLSNHIPR 464
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 6.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 270 NWNLWTGLLRRTWPARFQRSTQK 338
NW+ L R WP F RS+Q+
Sbjct: 644 NWSSIGRLRRSEWPRSFNRSSQQ 666
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.0 bits (52), Expect = 6.2
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = -3
Query: 404 WNHFIASSFVRRW 366
W+H+I++SF+ +W
Sbjct: 519 WSHYISASFLSKW 531
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 8.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 122 TVRGAKAEEILERGLKVREYE 184
T+ G KA+ RGL++R YE
Sbjct: 432 TLEGHKAKSRSTRGLRIRSYE 452
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,457
Number of Sequences: 5004
Number of extensions: 42605
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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