Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10711
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 140 6e-34
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 140 6e-34
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 139 1e-33
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 94 5e-20
02_02_0196 + 7685933-7685961,7686086-7686284 89 2e-18
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 43 2e-04
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 33 0.16
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 32 0.29
02_05_1342 - 35804617-35804700,35804979-35805262,35805542-358055... 29 2.0
01_03_0040 + 11888291-11888419,11888525-11888662,11888913-118890... 29 2.0
01_06_0514 + 29955129-29955796,29955903-29956023 29 2.7
12_01_0536 - 4212206-4212369,4212476-4212629,4212713-4212811,421... 28 3.5
11_06_0648 + 25873779-25874279,25874418-25875548 28 3.5
08_02_0286 - 15326876-15328135 28 3.5
01_06_0957 - 33352904-33353212,33353316-33353465,33353544-333536... 27 6.2
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 140 bits (339), Expect = 6e-34
Identities = 69/89 (77%), Positives = 75/89 (84%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREY 181
LTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EY
Sbjct: 32 LTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEY 91
Query: 182 ELRRDNFSATGNFGFGIQEHIDLGTSTIP 268
EL R NFS TG FGFGIQEHIDLG P
Sbjct: 92 ELLRRNFSETGCFGFGIQEHIDLGIKYDP 120
Score = 93.9 bits (223), Expect = 6e-20
Identities = 41/58 (70%), Positives = 46/58 (79%)
Frame = +1
Query: 247 LGYKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 420
LG KYDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 114 LGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 171
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 140 bits (339), Expect = 6e-34
Identities = 69/89 (77%), Positives = 75/89 (84%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREY 181
LTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EY
Sbjct: 32 LTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEY 91
Query: 182 ELRRDNFSATGNFGFGIQEHIDLGTSTIP 268
EL R NFS TG FGFGIQEHIDLG P
Sbjct: 92 ELLRRNFSETGCFGFGIQEHIDLGIKYDP 120
Score = 93.9 bits (223), Expect = 6e-20
Identities = 41/58 (70%), Positives = 46/58 (79%)
Frame = +1
Query: 247 LGYKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 420
LG KYDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 114 LGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 171
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 139 bits (336), Expect = 1e-33
Identities = 68/84 (80%), Positives = 74/84 (88%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREY 181
LTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EY
Sbjct: 58 LTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEY 117
Query: 182 ELRRDNFSATGNFGFGIQEHIDLG 253
EL R NFS TG FGFGIQEHIDLG
Sbjct: 118 ELLRRNFSDTGCFGFGIQEHIDLG 141
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 94.3 bits (224), Expect = 5e-20
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKV 172
LTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLK+
Sbjct: 32 LTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKI 88
Score = 90.2 bits (214), Expect = 8e-19
Identities = 38/56 (67%), Positives = 45/56 (80%)
Frame = +1
Query: 253 YKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 420
++YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 115 FRYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 170
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/62 (64%), Positives = 45/62 (72%)
Frame = +1
Query: 235 RTH*LGYKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKY 414
R H YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY
Sbjct: 3 RMHQYDVWYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKY 62
Query: 415 DG 420
+G
Sbjct: 63 EG 64
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 42.7 bits (96), Expect = 2e-04
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILER----GL- 166
L A K L +TGQ PV +KA+ +V SF IR I + T+RG L+R GL
Sbjct: 124 LESAMKDLAMITGQWPVKTKAKKSVASFKIREGNTIGIAVTLRGRVMFNFLDRLINLGLP 183
Query: 167 KVREY-ELRRDNFSATGNFGFGIQE 238
+ ++ + ++F GNF G+++
Sbjct: 184 RTMDFLGVNPNSFDGHGNFTIGLRD 208
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 101 EKIAVHCTVRGAKAEEILERGLK 169
EKIA + TVRG KA ++LE GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 101 EKIAVHCTVRGAKAEEILERGLK 169
EKIA + TVRG KA ++LE GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>02_05_1342 -
35804617-35804700,35804979-35805262,35805542-35805587,
35805728-35805985,35806089-35806205
Length = 262
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 183 NCGVTTSPPRVILASVFKNTLTWVQVRSLNWNLWTGLLRRTWPARF 320
+CG T +IL S NT+ + Q+R NW + + W RF
Sbjct: 216 SCGTTPLNCALILVSHRVNTMPYFQLRENNWT-FNAYMDGKWDVRF 260
>01_03_0040 +
11888291-11888419,11888525-11888662,11888913-11889011,
11889171-11889557
Length = 250
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 189 GVTTSPPRVILASVFKNTLTWVQVRSLNWNLWTGLLR-RTWPARF---QRSTQKA*DRKS 356
G+T P + ++F + + W+ RS W + L++ P RF +R D +
Sbjct: 166 GLTAGEPDHNVDAIFSDIVAWLNGRSRTWTVEDRLMKMMASPDRFIRGERGGAADVDGDA 225
Query: 357 GISPPPHKGRCY 392
PP +G C+
Sbjct: 226 KRGPPRRRGGCF 237
>01_06_0514 + 29955129-29955796,29955903-29956023
Length = 262
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -2
Query: 216 LPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTAIFSLRRIPKDRTVYLALENTGCC 40
L V + + R + S+ T +P+ + S LA V + + +R+ +DR +Y+ L C
Sbjct: 171 LEVCKGVPRSSKKSIFTIEPIGELPSTLAC-AVSRSCCYCRKRLQQDRDIYMYLGEKAFC 229
Query: 39 PVSC 28
C
Sbjct: 230 SNEC 233
>12_01_0536 -
4212206-4212369,4212476-4212629,4212713-4212811,
4212917-4213124,4214437-4214639,4214728-4214801,
4214968-4215043,4215256-4215360
Length = 360
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 166
+T A +++ +G FSK RY R GI K + V+ A+ E + E G+
Sbjct: 305 VTEAGGLVKDASGNDLDFSKGRYLDRDAGIIATNKYLMPLVVKAAQ-EAMKEEGI 358
>11_06_0648 + 25873779-25874279,25874418-25875548
Length = 543
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 20 VLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEE 148
+LE LTG++P FSK + R E+ C G EE
Sbjct: 398 MLEVLTGKKPYFSKEEWEKEKTEERVEEEKREECEQEGKNTEE 440
>08_02_0286 - 15326876-15328135
Length = 419
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 95 RNEKIAVHCTVR-GAKAEEILERGLKVREYELRR 193
R +++ V C V A A+E+L RG + + ELRR
Sbjct: 147 RGDRLVVECAVLLAADADEVLRRGPRPLDDELRR 180
>01_06_0957 -
33352904-33353212,33353316-33353465,33353544-33353684,
33354116-33354709
Length = 397
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 242 IDLGTSTIPQLEFMDWTFTSYLAGQVS--T*HTEGVRQEKWDFPTASQRKML*SGSN 406
+ + I + F +W T+ A ++ T T G ++W TA+ R+ML GS+
Sbjct: 94 LGVSVGVICNVMFPEWLITALFAVFLASATFKTYGTGMKRWRAETAAARRMLEGGSS 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,429,991
Number of Sequences: 37544
Number of extensions: 277833
Number of successful extensions: 723
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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