Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10711
(493 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0) 160 7e-40
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 30 0.90
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 29 2.8
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_38268| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_45994| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
Length = 260
Score = 160 bits (388), Expect = 7e-40
Identities = 77/91 (84%), Positives = 82/91 (90%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREY 181
LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI+VHCTVRG KAEEILE+GLKV+EY
Sbjct: 25 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKISVHCTVRGPKAEEILEKGLKVKEY 84
Query: 182 ELRRDNFSATGNFGFGIQEHIDLGTSTIPQL 274
EL + FSATGNFGFGIQEHIDLG P +
Sbjct: 85 ELVKGCFSATGNFGFGIQEHIDLGIKYDPSI 115
Score = 107 bits (256), Expect = 6e-24
Identities = 44/55 (80%), Positives = 51/55 (92%)
Frame = +1
Query: 247 LGYKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQK 411
LG KYDPSIGIYG+DF+VVLGRPGFN++ R+ K G+VGFPHRLTK+DAMKWFQQK
Sbjct: 107 LGIKYDPSIGIYGMDFFVVLGRPGFNISKRKHKQGRVGFPHRLTKDDAMKWFQQK 161
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 30.3 bits (65), Expect = 0.90
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = -2
Query: 228 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRT 73
P P++P + L S + S S +KP+SRI ++L+ ++Q ++ + +P+ T
Sbjct: 149 PLPRIPTSPSLVSLQVSPSYPYKPVSRIPTSLSLVSLQAPPLYPYKPLPRIST 201
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 228 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRT 73
P P++P + L S S +KPLSRI ++ + ++Q +A + + +P+ T
Sbjct: 299 PLPRIPTSPSLVSLLARPSYLYKPLSRIPTSPSLVSLQASASYPYKTLPRIST 351
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 6 LVPPRCWSNSQDNSLYFP 59
LVPP W+ SQD +Y+P
Sbjct: 746 LVPPMPWTGSQDAGMYYP 763
>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1127
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 357 HFSCLTPSVCYVETWPAKYDVKVQSINSN*GIVLVPKSMCS 235
HF C S ++ T +KY S NSN +VL+P S C+
Sbjct: 1088 HFRCWVLSQKHISTVVSKYSSN--SENSNFSLVLIPISACA 1126
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -2
Query: 228 PKPKLPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTAIFSLRRIPK 82
P P++P + L + L T+KPL RIS++L+ ++Q + + + +P+
Sbjct: 303 PLPRIPTSLSLVSLQAPPLYTYKPLPRISTSLSLVSLQASPSYPYKPLPR 352
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 171 TFKPLSRISSALAPRTVQWTAIFSLRRIPKDR 76
T KP S + P+ +WTA L PK+R
Sbjct: 389 TLKPRSILPDGRTPKNPEWTACVKLGMNPKER 420
>SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 738
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 92 RRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNF 220
RR + RGA A EI ++G+K + E RR+ G +
Sbjct: 147 RREDTFPKEKEARGANANEISKQGVKEKARETRREIVRQEGKY 189
>SB_38268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 155 ERGLKVREYELRRDNFSATGNFGFGIQEHIDLGTSTIPQLE 277
E L ++E E +D +G +G+ +E + GT+ P+ E
Sbjct: 567 EGSLAMKELEAVKDLLLKSGTYGYAFRETLGTGTTPPPEPE 607
>SB_45994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 54 FPRLGIQCGLLVSVVMKRLLSIVQSEELKQKK 149
F L + GL+ +++ KRLLSI S + ++ K
Sbjct: 196 FSALSLVSGLMAAIIAKRLLSIKTSRDSEKHK 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,391,284
Number of Sequences: 59808
Number of extensions: 320819
Number of successful extensions: 826
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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