Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10711
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   160   6e-40
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   159   1e-39
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    30   1.0  
L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    29   1.8  
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    29   2.4  
U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine rece...    28   4.2  
Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm rece...    27   5.6  
U61946-8|AAC24392.1|  185|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  160 bits (388), Expect = 6e-40
 Identities = 75/91 (82%), Positives = 82/91 (90%)
 Frame = +2

Query: 2   LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREY 181
           LTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKIAVHCTVRG KAEEILE+GLKV+EY
Sbjct: 40  LTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEY 99

Query: 182 ELRRDNFSATGNFGFGIQEHIDLGTSTIPQL 274
           EL ++NFS TGNFGFG+QEHIDLG    P +
Sbjct: 100 ELYKENFSDTGNFGFGVQEHIDLGIKYDPSI 130



 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 39/58 (67%), Positives = 47/58 (81%)
 Frame = +1

Query: 247 LGYKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 420
           LG KYDPSIGIYG+DFYVVL R G  +A RRR  G+VG  HR+ +E+++KWFQQKYDG
Sbjct: 122 LGIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDG 179


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  159 bits (385), Expect = 1e-39
 Identities = 75/89 (84%), Positives = 81/89 (91%)
 Frame = +2

Query: 2   LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREY 181
           LTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKIAVHCTVRG KAEEILE+GLKV+EY
Sbjct: 40  LTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEY 99

Query: 182 ELRRDNFSATGNFGFGIQEHIDLGTSTIP 268
           EL ++NFS TGNFGFG+QEHIDLG    P
Sbjct: 100 ELFKENFSDTGNFGFGVQEHIDLGIKYDP 128



 Score = 89.8 bits (213), Expect = 9e-19
 Identities = 38/58 (65%), Positives = 45/58 (77%)
 Frame = +1

Query: 247 LGYKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 420
           LG KYDP IGIYG+DFYVVL R G  V+ RRR  G++G  HR+ KE+ +KWFQQKYDG
Sbjct: 122 LGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDG 179


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 262 DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 384
           DP  GI G+  + V G   F +A R+  +GK     RL K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKK 200


>L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical
           protein K06H7.2 protein.
          Length = 406

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 231 FKNTLTWVQVRSLNWNLWTGLLRRTWPARFQRSTQKA*DRKSGISPPPHKGRCYEV 398
           FK    W +  S    +  G+  R W  +FQR   K     S  S   + GRCY++
Sbjct: 302 FKEAFLWQRSTSNTEEITKGIEIRPWNEQFQRENAKF---WSDFSEYCYSGRCYQI 354


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 223  AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 86
            AK+ + G ++ PQ  FS+F+  +  FF  +    T+  N  I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 184 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 95
           ++  DF+  +KDFF C   SD T  S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 122 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQ 235
           ++R   AEE+  RG  +  Y E+RR     TG FG G +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFE 391


>U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 31 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 139 FSSSDCTMDSNLFITTDTKRPHCIPSLGKYRLLS 38
           F SS+C ++SNL+  T+     C  SL   RLLS
Sbjct: 97  FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130


>Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical
           protein C09F9.3 protein.
          Length = 800

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 130 SDCTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 17
           S CT+D   F   D+K+  C+ S+ K   Y +++ E+  H+
Sbjct: 205 SICTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245


>AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 85 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 184 FIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDTKRPH 74
           ++  DF+T +K+FF   +   T  S+  +TT  K  H
Sbjct: 300 YVIKDFRTAVKNFFKRGTKSGTSPSSAVLTTKKKAWH 336


>U61946-8|AAC24392.1|  185|Caenorhabditis elegans Hypothetical
           protein F47C12.7 protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 172 DFQTPLKDFFCFSSSDCTMDSNLFITTDTK 83
           DF T   +F CF S DC+ D+  +  T  K
Sbjct: 61  DFPTFHYEFNCFLSHDCSTDNKWYCQTRAK 90


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
           protein ZC84.1 protein.
          Length = 1556

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -2

Query: 384 FLCEAVGKSHFSCLTP-SVC 328
           F C A+G  H  C TP SVC
Sbjct: 394 FQCTAIGSQHLCCPTPGSVC 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,364,817
Number of Sequences: 27780
Number of extensions: 237863
Number of successful extensions: 612
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)