Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10711
(493 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 139 8e-34
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 139 8e-34
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 139 8e-34
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 139 8e-34
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 139 8e-34
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 44 7e-05
At4g26330.1 68417.m03786 subtilase family protein contains simil... 29 1.7
At1g09540.1 68414.m01070 myb family transcription factor (MYB61)... 28 3.9
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 27 5.2
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 5.2
At4g12230.1 68417.m01940 esterase/lipase/thioesterase family pro... 27 6.9
At4g00670.1 68417.m00092 remorin family protein contains Pfam do... 27 6.9
At4g32970.1 68417.m04690 expressed protein low similarity to SP|... 27 9.1
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 139 bits (337), Expect = 8e-34
Identities = 69/89 (77%), Positives = 75/89 (84%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREY 181
LTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EY
Sbjct: 32 LTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEY 91
Query: 182 ELRRDNFSATGNFGFGIQEHIDLGTSTIP 268
EL R NFS TG FGFGIQEHIDLG P
Sbjct: 92 ELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = +1
Query: 247 LGYKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 420
LG KYDPS GIYG+DFYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 114 LGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 139 bits (337), Expect = 8e-34
Identities = 69/89 (77%), Positives = 75/89 (84%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREY 181
LTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EY
Sbjct: 22 LTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEY 81
Query: 182 ELRRDNFSATGNFGFGIQEHIDLGTSTIP 268
EL R NFS TG FGFGIQEHIDLG P
Sbjct: 82 ELLRRNFSDTGCFGFGIQEHIDLGIKYDP 110
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = +1
Query: 247 LGYKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 420
LG KYDPS GIYG+DFYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 104 LGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 161
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 139 bits (337), Expect = 8e-34
Identities = 69/89 (77%), Positives = 75/89 (84%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREY 181
LTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EY
Sbjct: 32 LTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEY 91
Query: 182 ELRRDNFSATGNFGFGIQEHIDLGTSTIP 268
EL R NFS TG FGFGIQEHIDLG P
Sbjct: 92 ELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = +1
Query: 247 LGYKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 420
LG KYDPS GIYG+DFYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 114 LGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 139 bits (337), Expect = 8e-34
Identities = 69/89 (77%), Positives = 75/89 (84%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREY 181
LTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EY
Sbjct: 32 LTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEY 91
Query: 182 ELRRDNFSATGNFGFGIQEHIDLGTSTIP 268
EL R NFS TG FGFGIQEHIDLG P
Sbjct: 92 ELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = +1
Query: 247 LGYKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 420
LG KYDPS GIYG+DFYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 114 LGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 139 bits (337), Expect = 8e-34
Identities = 69/89 (77%), Positives = 75/89 (84%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREY 181
LTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EY
Sbjct: 22 LTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEY 81
Query: 182 ELRRDNFSATGNFGFGIQEHIDLGTSTIP 268
EL R NFS TG FGFGIQEHIDLG P
Sbjct: 82 ELLRRNFSDTGCFGFGIQEHIDLGIKYDP 110
Score = 95.9 bits (228), Expect = 1e-20
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = +1
Query: 247 LGYKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 420
LG KYDPS GIYG+DFYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 104 LGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEG 161
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 43.6 bits (98), Expect = 7e-05
Identities = 22/85 (25%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Frame = +2
Query: 2 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL----- 166
L A K + +TGQ+P+ ++AR ++ +F IR ++ + + T+RG L+R +
Sbjct: 105 LEAAMKDIALITGQKPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLALP 164
Query: 167 KVREYE-LRRDNFSATGNFGFGIQE 238
+ R+++ + +F GN+ G+++
Sbjct: 165 RTRDFQGVSPSSFDGNGNYSIGVKD 189
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -2
Query: 222 PKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRTVYLA 61
P++ V K + +SY +TFKP S + WT L R+ V+L+
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWTN--GLHRVRSPVVVFLS 738
>At1g09540.1 68414.m01070 myb family transcription factor (MYB61)
contains PFAM profile: myb DNA-binding domain PF00249
Length = 366
Score = 27.9 bits (59), Expect = 3.9
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = -1
Query: 292 SPVHKFQLRDRTCTQVNVFLNTEAKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMD 113
S V F +D+ T N + K + T Q F + + L D+F F + +
Sbjct: 130 SEVESFSDKDKPTTSNNKRSGNDHK-SPSSSSATNQDFFLERPSDLSDYFGFQKLNFNSN 188
Query: 112 SNLFITTDTKRPHCIP 65
L +TTD+ IP
Sbjct: 189 LGLSVTTDSSLCSMIP 204
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 143 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLG 253
E+ +E L+ RE L+ D F+ G GF G + +DLG
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLG 167
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 150 ISSALAPRTVQWTAIFSLRRIPKDRTVYLALENTGCCPVSCSNTL 16
I S L R +W + SLR++ KDR A++ GC + +N +
Sbjct: 438 ILSNLYARNKKWEYVDSLRKVMKDRK---AVKVPGCSSIEVNNVV 479
>At4g12230.1 68417.m01940 esterase/lipase/thioesterase family
protein low similarity to
2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase; OhpC
[Rhodococcus sp.] GI:8926386; contains Interpro entry
IPR000379
Length = 392
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 423 DTIIFLLEPLHSIFLCEAVGKSHFSCLTPSVCY 325
DTI L L+++ L + G+ + SC+ ++CY
Sbjct: 343 DTIQLLSSSLNNLILVQLAGEVYQSCVVFTLCY 375
>At4g00670.1 68417.m00092 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 116
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 95 RNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATG 214
RNEK AVH + KA+ R ++ + E F A G
Sbjct: 66 RNEKAAVHAKAQKKKADVQTRRAQEILDAEEAAARFQAAG 105
>At4g32970.1 68417.m04690 expressed protein low similarity to
SP|Q13061 Triadin {Homo sapiens}
Length = 750
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = +2
Query: 92 RRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGTSTIPQ 271
R+ + IA ++ EI E+ + L D + N FG D+G PQ
Sbjct: 582 RKEQSIADTLSIVRQFRSEIEEKEDMLEASLLEIDVLGLSDNVMFGTNRGEDIGNQQNPQ 641
Query: 272 LEFMDWTFTS 301
L+ + W S
Sbjct: 642 LKIIKWIANS 651
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,763,864
Number of Sequences: 28952
Number of extensions: 223634
Number of successful extensions: 630
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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