Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10703
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08)                   30   1.9  
SB_53950| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   7.7  

>SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08)
          Length = 1259

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 456 QQLDSQCKQGNIFSNWLEKKLTSLRSSKTFLKFLNAWTHNPRQRF*LQVLL 608
           Q L+S  + GN+      K  +S   S++ L+++  W    RQR  L+ +L
Sbjct: 218 QILESHIQTGNLLPEHFYKVTSSRGYSESLLEWIRTWDQEARQRILLERML 268


>SB_53950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 201 AFVELNHYNNEC-ESEGVMAAAIDLLTNDECRLLLEVEDFFNDDCDLLKNF 350
           A V+L  Y NE     GV+ A I    ND+C L  + +D F+D+   LK +
Sbjct: 269 AKVKLRTYGNEIIVPMGVVNANISY--NDQCYLTEKYQDVFSDELGCLKGY 317


>SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 119 NGALTGQVSPSSQNTNIIRHQSLWTFIRIRGTKSLQ 226
           +G  TG  +PS  +TNIIRH     +  +  T  ++
Sbjct: 57  SGITTGTATPSVNSTNIIRHYYWHRYAHVNSTNIIR 92


>SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 700

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 137 QVSPSSQNTNIIRHQSLWT 193
           QVS SS  TN +RH+S+W+
Sbjct: 458 QVSKSSNFTNSLRHKSVWS 476


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,835,319
Number of Sequences: 59808
Number of extensions: 401852
Number of successful extensions: 896
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)