Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10703
         (660 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118612-1|AAM49981.1|  218|Drosophila melanogaster LP10549p pro...    29   5.6  
AY061331-1|AAL28879.1|  403|Drosophila melanogaster LD25702p pro...    29   5.6  
AE014296-1025|AAF50735.1|  525|Drosophila melanogaster CG10489-P...    29   5.6  
AE013599-3064|AAF57428.1|  218|Drosophila melanogaster CG30152-P...    29   5.6  
AB102715-1|BAD10843.1|  403|Drosophila melanogaster DNA polymera...    29   5.6  
AE014296-1303|ABI31241.1|  694|Drosophila melanogaster CG34121-P...    29   7.4  

>AY118612-1|AAM49981.1|  218|Drosophila melanogaster LP10549p
           protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 582 AGGCGSTRSGTSEMFSKIEGRSTFSLTSWRKYSLVCID 469
           AGG GS+ SGT    + I GRS  +    RK S + +D
Sbjct: 33  AGGTGSSESGTGSSSASISGRSQNADELVRKTSQMSMD 70


>AY061331-1|AAL28879.1|  403|Drosophila melanogaster LD25702p
           protein.
          Length = 403

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 512 KVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLR 640
           ++DLP + E + ++    D  PP A++   PF  S      LR
Sbjct: 171 RLDLPVVMEKLRQLFVGYDSCPPQAIVLMGPFTASTRNHHELR 213


>AE014296-1025|AAF50735.1|  525|Drosophila melanogaster CG10489-PA
           protein.
          Length = 525

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 512 KVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLR 640
           ++DLP + E + ++    D  PP A++   PF  S      LR
Sbjct: 293 RLDLPVVMEKLRQLFVGYDSCPPQAIVLMGPFTASTRNHHELR 335


>AE013599-3064|AAF57428.1|  218|Drosophila melanogaster CG30152-PA
           protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 582 AGGCGSTRSGTSEMFSKIEGRSTFSLTSWRKYSLVCID 469
           AGG GS+ SGT    + I GRS  +    RK S + +D
Sbjct: 33  AGGTGSSESGTGSSSASISGRSQNADELVRKTSQMSMD 70


>AB102715-1|BAD10843.1|  403|Drosophila melanogaster DNA polymerase
           epsilon secondsubunit protein.
          Length = 403

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 512 KVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLR 640
           ++DLP + E + ++    D  PP A++   PF  S      LR
Sbjct: 171 RLDLPVVMEKLRQLFVGYDSCPPQAIVLMGPFTASTRNHHELR 213


>AE014296-1303|ABI31241.1|  694|Drosophila melanogaster CG34121-PA
           protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 222 YNNECESEGVMAAAIDLLTNDECRLLLEVEDFFNDDCDL 338
           ++NE E E  +  AI L + D+   L ++ED F +D  L
Sbjct: 329 FDNEEEDEQPIPRAIILASGDDGTCLTDIEDMFCEDSSL 367


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,929,035
Number of Sequences: 53049
Number of extensions: 592089
Number of successful extensions: 1633
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)