Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10703
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47080.1 68416.m05112 expressed protein                             29   2.7  
At3g57780.1 68416.m06436 expressed protein                             27   8.4  
At3g30670.1 68416.m03887 hypothetical protein                          27   8.4  
At2g24060.1 68415.m02874 translation initiation factor 3 (IF-3) ...    27   8.4  
At1g40125.1 68414.m04763 hypothetical protein member of hypothet...    27   8.4  
At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes f...    27   8.4  

>At3g47080.1 68416.m05112 expressed protein
          Length = 515

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 362 CSARKVFKQITIIIEEILNFEQQTALIVSEQIDGRSHDS 246
           CS  + F  +  +IEE+ +F  QT + V +Q+    H S
Sbjct: 217 CSINRAFSSMVFMIEELHSFALQTRVGVLKQVKKEMHAS 255


>At3g57780.1 68416.m06436 expressed protein
          Length = 670

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 586 RCRGLWVHAFRNFRNVFEDRREVNFFSNQLEKI 488
           R +  W      F+ VFED +E   F+  LEK+
Sbjct: 300 RKKNQWTKQSNGFKQVFEDWQESQTFTAALEKV 332


>At3g30670.1 68416.m03887 hypothetical protein
          Length = 133

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 530 IFENISEVPERVDPQPPAAVLASSPFVTSQP 622
           +F++ +  P+RVDP PP       P ++  P
Sbjct: 79  LFQHSTNQPQRVDPLPPQETAQQDPPLSPDP 109


>At2g24060.1 68415.m02874 translation initiation factor 3 (IF-3)
           family protein similar to SP|P33319 Translation
           initiation factor IF-3 {Proteus vulgaris}; contains Pfam
           profiles PF00707: Translation initiation factor IF-3,
           C-terminal domain, PF05198: Translation initiation
           factor IF-3, N-terminal domain
          Length = 312

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 504 LEKKLTSLRSSKTFLKFLNAWTHNPRQRF 590
           ++ KL SLR SKT L F N  T +PR+ F
Sbjct: 30  VDSKLCSLRLSKTELSFTNL-TPSPRRAF 57


>At1g40125.1 68414.m04763 hypothetical protein member of
           hypothetical protein common family
          Length = 168

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 530 IFENISEVPERVDPQPPAAVLASSPFVTSQP 622
           +F++ +  P+RVDP PP       P ++  P
Sbjct: 78  LFQHSTNQPQRVDPLPPQETAQQDPPLSPDP 108


>At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes from
           this gene
          Length = 206

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 77  TSVCLHAQYKNACQNGALTGQVSPSSQNTNIIRHQSLWTFIRIR 208
           T VC+     N   N     Q SP + NT+I+ H S  + +R R
Sbjct: 111 TKVCVDNNNNNTT-NSTCKKQQSPITSNTSIVEHNSAKSSLRWR 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,706,108
Number of Sequences: 28952
Number of extensions: 270382
Number of successful extensions: 786
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)