Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10701
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 133 2e-32
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 133 2e-32
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 81 2e-16
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 63 3e-11
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 30 0.29
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 30 0.39
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 29 0.90
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 29 0.90
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 28 1.6
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 2.1
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 27 2.1
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.7
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 27 3.6
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 27 3.6
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 27 3.6
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 27 3.6
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 4.8
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 4.8
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 4.8
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 6.3
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 25 8.4
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c... 25 8.4
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 8.4
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 133 bits (322), Expect = 2e-32
Identities = 58/87 (66%), Positives = 70/87 (80%)
Frame = +2
Query: 251 VFTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMA 430
+ +++ +DVT+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M
Sbjct: 618 IMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMF 677
Query: 431 EENLRGVRFNIYDVTLHTDAIHRGGGK 511
EENLR RFNI DV LH DAIHRGGG+
Sbjct: 678 EENLRSCRFNILDVVLHADAIHRGGGQ 704
Score = 124 bits (300), Expect = 1e-29
Identities = 58/85 (68%), Positives = 67/85 (78%)
Frame = +3
Query: 3 ELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP 182
ELHLEICLKDL+EDHA IP+K S PVVSYRE+V+E S LSKSPNKHNR+FM A+PM
Sbjct: 535 ELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTALSKSPNKHNRIFMTAEPMS 594
Query: 183 DGLPEDIDEGRVNPRDDFKTRARYL 257
+ L I+ G VNPRDDFK RAR +
Sbjct: 595 EELSVAIETGHVNPRDDFKVRARIM 619
Score = 94.7 bits (225), Expect = 1e-20
Identities = 43/70 (61%), Positives = 52/70 (74%)
Frame = +1
Query: 508 QIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGT 687
QIIPT RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF E Q GT
Sbjct: 704 QIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGT 763
Query: 688 PMFIVKAYLP 717
P++ +KAYLP
Sbjct: 764 PLYNIKAYLP 773
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 133 bits (322), Expect = 2e-32
Identities = 58/87 (66%), Positives = 70/87 (80%)
Frame = +2
Query: 251 VFTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMA 430
+ +++ +DVT+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M
Sbjct: 618 IMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMF 677
Query: 431 EENLRGVRFNIYDVTLHTDAIHRGGGK 511
EENLR RFNI DV LH DAIHRGGG+
Sbjct: 678 EENLRSCRFNILDVVLHADAIHRGGGQ 704
Score = 124 bits (300), Expect = 1e-29
Identities = 58/85 (68%), Positives = 67/85 (78%)
Frame = +3
Query: 3 ELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP 182
ELHLEICLKDL+EDHA IP+K S PVVSYRE+V+E S LSKSPNKHNR+FM A+PM
Sbjct: 535 ELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTALSKSPNKHNRIFMTAEPMS 594
Query: 183 DGLPEDIDEGRVNPRDDFKTRARYL 257
+ L I+ G VNPRDDFK RAR +
Sbjct: 595 EELSVAIETGHVNPRDDFKVRARIM 619
Score = 94.7 bits (225), Expect = 1e-20
Identities = 43/70 (61%), Positives = 52/70 (74%)
Frame = +1
Query: 508 QIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGT 687
QIIPT RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF E Q GT
Sbjct: 704 QIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGT 763
Query: 688 PMFIVKAYLP 717
P++ +KAYLP
Sbjct: 764 PLYNIKAYLP 773
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 80.6 bits (190), Expect = 2e-16
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Frame = +2
Query: 254 FTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEG 421
F + Y++D+ +R IW FGP+ G NIL D + LN +K+ + GFQW +EG
Sbjct: 731 FQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQWGTREG 790
Query: 422 VMAEENLRGVRFNIYDVTLHTDAIHRGGGKSFQQLEDAC 538
+ +E +R V F + DV L + I+RGGG+ C
Sbjct: 791 PLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVC 829
Score = 80.2 bits (189), Expect = 3e-16
Identities = 35/70 (50%), Positives = 49/70 (70%)
Frame = +1
Query: 508 QIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGT 687
QIIPT RR Y+ LTA PRLMEPVY+ E+ P ++ IY +L RRRGHV ++ G+
Sbjct: 820 QIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGS 879
Query: 688 PMFIVKAYLP 717
P+++V+A +P
Sbjct: 880 PLYLVRALIP 889
Score = 64.1 bits (149), Expect = 2e-11
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = +3
Query: 3 ELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP 182
E++++ L DL ++ I I+ SDPV + ET + S C S +PNK NR+ M +P+
Sbjct: 647 EMYMDCLLYDLRTLYSEIEIRVSDPVARFCETAVDTSSIKCFSDTPNKKNRITMVVEPLE 706
Query: 183 DGLPEDIDEGRVNPRDDFKTRARYLQKS 266
G+ DI+ G+VN K + + QK+
Sbjct: 707 KGISNDIENGKVNINWPQKRISEFFQKN 734
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 63.3 bits (147), Expect = 3e-11
Identities = 28/70 (40%), Positives = 41/70 (58%)
Frame = +1
Query: 508 QIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGT 687
Q+I + + L PRLM +Y C++Q +G +YGV+++RRG V +E GT
Sbjct: 842 QVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGT 901
Query: 688 PMFIVKAYLP 717
P FIVKA +P
Sbjct: 902 PFFIVKALIP 911
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/44 (52%), Positives = 27/44 (61%)
Frame = +3
Query: 3 ELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSK 134
E+HLE CLKDL E A I I+ S P+V YRET D L +K
Sbjct: 610 EIHLERCLKDLRERFAKIEIQASQPLVPYRETTIATPDLLAKNK 653
Score = 29.9 bits (64), Expect = 0.39
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Frame = +2
Query: 296 IWCFGPEGTGPNILVDCSKGVQYL-----------NEIKDSVVAGFQWAAKEGVMAEENL 442
I FGP+ GPNIL D +K ++ +++ + VV FQ +G + E +
Sbjct: 751 IIAFGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAEPV 810
Query: 443 RGVRFNIYDVTLHTDA 490
+G+ +I + D+
Sbjct: 811 QGICVSIDQFDISDDS 826
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 30.3 bits (65), Expect = 0.29
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 24 LKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP 182
+K LEE+ + +K SD V + ++ + P +++FM PMP
Sbjct: 287 VKYLEENFGALKVKLSDATVKEIREACDNAEVIGARYPPGAGSKIFMDTPPMP 339
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 29.9 bits (64), Expect = 0.39
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 218 KSPR*LQDSRSVFTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKG--VQYL--NEIKDS 385
K PR L ++ +F + E T ++IW P NIL+ S G VQYL +E +S
Sbjct: 366 KIPRFLGETELIFYAEVELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQYLRVSEPSNS 425
Query: 386 VVAGFQW 406
+W
Sbjct: 426 KYKSIKW 432
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 28.7 bits (61), Expect = 0.90
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 550 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFE 666
L A P ++EP+ I P GG+ G L++R+ + +
Sbjct: 668 LQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVD 706
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 28.7 bits (61), Expect = 0.90
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +3
Query: 21 CLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGL 191
C++DL++ + K+SD Y T+ ++KS KHN+L K +P+P L
Sbjct: 214 CVRDLKKLEKKVK-KRSDLGNKYESTLNS-----LINKSVKKHNKLVKKHKPLPSTL 264
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 27.9 bits (59), Expect = 1.6
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +3
Query: 183 DGLPEDIDEGRVNPRDDFKTRARYLQKSTNTMLPK--PVRFGALAPRVPAPTSWSIAPKE 356
DG +D + G + K R++ + TN +L K PV++ + + S+ K
Sbjct: 482 DGTEKDKENGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLY-KH 540
Query: 357 FSTSMKLRTLLWLDSSGPLRKELWLKRIC 443
F TS ++ +L S PL+ LK+IC
Sbjct: 541 FITSPEINKILRGTGSQPLKAIGLLKKIC 569
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 15 EICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNK 146
E+C +LE+D I +S +S + A++ DQL S + +K
Sbjct: 64 ELCNFELEKDSLESMIHESSTALSAQSNTAQDGDQLASSSTISK 107
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 501 PLWMASVWSVTS*MLNRTPRKFSSAITPSLAAHWNPATTESLISLRY 361
P W+A V ++ S + P FSS + +L A+ N + + + Y
Sbjct: 43 PFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRDITTHYY 89
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 159 FMKAQPMPDGLPEDIDEGRVNPRDDFKT-RARYLQKSTNTMLPKPVRFGALAPRVPAPTS 335
F KA P+ D +DE +VN + ++ +A T +PK R+ LA + P+ ++
Sbjct: 422 FTKATPLKDNESASVDESKVNVLSENQSLQADTATLEQLTPIPK-ARWNQLANKHPSLSN 480
Query: 336 WSIAPKEFSTSMK 374
+ +P S ++
Sbjct: 481 SAASPPVSSPGLR 493
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 499 RWWQIIPTTRRCLYACLLTAQPRLMEPVYL-CEIQCPEVAVGGIYGVLNRRRGHVFEESQ 675
++++ IP T RC+ + + + P+L P L + CP + + V+ H F
Sbjct: 381 KFFEDIPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEV-SVITLAPQHSFLNIV 439
Query: 676 VAGTPMFIVKAY 711
+ P +K+Y
Sbjct: 440 INLNPALALKSY 451
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 251 VFTEKY-EYDVTEARKIWCFGPEGTGPNIL 337
++ EK+ + VT ++ + FGP GTG +L
Sbjct: 518 MYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 302 TKSYGLR*HRIRTFL*IPSASLEVIAGIYATLINVLWQTIRHGLSLHEQTV 150
T G+R ++++ L SL ++ I T ++ + T HG SL Q +
Sbjct: 93 TVQAGIRFYQVQEILQNLGYSLPIVGSISETSVSGIMSTCTHGSSLQHQVL 143
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +3
Query: 174 PMPDGLPEDIDEGRVNPRDDFKTRARYLQKSTNTMLPKPVRFGALAPRVPAP 329
P LP+ +D V + T A+ + PKPVR ++P P
Sbjct: 594 PSSKQLPQSVDGKTVTANANSTTVAKQPTSNVALTRPKPVRTATSQSKIPKP 645
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 189 LPEDIDEGRVNPRDDFKT 242
LPE IDEG+++ DD KT
Sbjct: 194 LPEKIDEGKLSDVDDGKT 211
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -3
Query: 191 QTIRHGLSLHEQTVVLVGRL*E 126
+++RH +SL+E+T + +GRL E
Sbjct: 324 ESVRHLISLNEETWIQIGRLAE 345
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 258 QKSTNTMLPKPVRFGALAPRVPAPTSWSIAPKEFSTSMKLRTLLWLDSS 404
++ T T L + GA P +P T WS+A T TL W+ ++
Sbjct: 140 ERKTLTHLRRISLQGADDPEIP--TDWSVAMSPPETEQDASTLFWVPAN 186
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 284 EARKIWCFGPEGTGPNILVD--CSKGVQYLNE 373
E + GP G+G ++LVD S+ Q +NE
Sbjct: 574 EGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 312 GPKHQILRASVTSYSYFSVNTERES*SHRGDL 217
G KH +LRA+ +Y YFS + +++ H L
Sbjct: 318 GHKHLLLRAANIAYHYFSFDFLQKASLHSSTL 349
>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 534 ASSSCWNDLPPPLWMASVWSVTS 466
AS+S + LPPP + SV SVTS
Sbjct: 215 ASASISDSLPPPYQVLSVPSVTS 237
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 362 YLNEIKDSVVAGFQWAAKEGVMAEENLRGVR 454
YL+ + +AGFQ G+ ++N +GVR
Sbjct: 248 YLSPVVRRYLAGFQSGFLHGLKTKDNSKGVR 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,632
Number of Sequences: 5004
Number of extensions: 71419
Number of successful extensions: 216
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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