Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10701
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 134 4e-32
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 87 9e-18
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 87 9e-18
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 84 1e-16
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 55 4e-08
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 37 0.016
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 36 0.036
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 36 0.036
At5g13650.2 68418.m01585 elongation factor family protein contai... 33 0.26
At5g13650.1 68418.m01584 elongation factor family protein contai... 33 0.26
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 30 1.8
At2g25730.1 68415.m03084 expressed protein 30 1.8
At3g17310.2 68416.m02213 methyltransferase family protein simila... 29 4.2
At3g17310.1 68416.m02212 methyltransferase family protein simila... 29 4.2
At4g25190.1 68417.m03626 hypothetical protein contains Pfam pro... 28 7.3
At5g64813.1 68418.m08152 GTP-binding protein-related contains we... 27 9.6
At5g38500.1 68418.m04654 hypothetical protein contains Pfam prof... 27 9.6
At5g29070.1 68418.m03617 expressed protein 27 9.6
At5g07990.1 68418.m00930 flavonoid 3'-monooxygenase / flavonoid ... 27 9.6
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /... 27 9.6
At3g42790.1 68416.m04474 PHD finger family protein contains PHD-... 27 9.6
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF... 27 9.6
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 134 bits (325), Expect = 4e-32
Identities = 58/87 (66%), Positives = 72/87 (82%)
Frame = +2
Query: 251 VFTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMA 430
+ E++ +D A+KIW FGPE TGPN++VD KGVQYLNEIKDSVVAGFQWA+KEG +A
Sbjct: 619 ILAEEFGWDKDLAKKIWAFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGPLA 678
Query: 431 EENLRGVRFNIYDVTLHTDAIHRGGGK 511
EEN+RG+ F + DV LH+DAIHRGGG+
Sbjct: 679 EENMRGICFEVCDVVLHSDAIHRGGGQ 705
Score = 114 bits (274), Expect = 6e-26
Identities = 68/165 (41%), Positives = 94/165 (56%), Gaps = 6/165 (3%)
Frame = +3
Query: 3 ELHLEICLKDLEEDH-ACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPM 179
ELHLEICLKDL++D I KSDPVVS+RETV + S + +SKSPNKHNRL+M+A+PM
Sbjct: 535 ELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVCDRSTRTVMSKSPNKHNRLYMEARPM 594
Query: 180 PDGLPEDIDEGRVNPRDDFKTRARYLQKSTNTMLPKPVRFGALAPRVPAPTSWSIAPK-- 353
+GL E ID+GR+ PRDD K R++ L + + A P P K
Sbjct: 595 EEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWAFGPETTGPNMVVDMCKGV 654
Query: 354 EFSTSMK---LRTLLWLDSSGPLRKELWLKRICVVFDSTSMM*HS 479
++ +K + W GPL +E ++ IC F+ ++ HS
Sbjct: 655 QYLNEIKDSVVAGFQWASKEGPLAEEN-MRGIC--FEVCDVVLHS 696
Score = 106 bits (254), Expect = 2e-23
Identities = 46/70 (65%), Positives = 58/70 (82%)
Frame = +1
Query: 508 QIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGT 687
Q+IPT RR +YA +TA+PRL+EPVY+ EIQ PE A+GGIY VLN++RGHVFEE Q GT
Sbjct: 705 QVIPTARRVIYASQITAKPRLLEPVYMVEIQAPEGALGGIYSVLNQKRGHVFEEMQRPGT 764
Query: 688 PMFIVKAYLP 717
P++ +KAYLP
Sbjct: 765 PLYNIKAYLP 774
>At1g06220.2 68414.m00656 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 87.4 bits (207), Expect = 9e-18
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Frame = +2
Query: 254 FTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEG 421
F KY++D+ AR IW FGP+ GPNIL+D + + + +KDS+V GFQW A+EG
Sbjct: 732 FRTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDRNLMMAVKDSIVQGFQWGAREG 791
Query: 422 VMAEENLRGVRFNIYDVTLHTDAIHRGGGK 511
+ +E +R V+F I D + + +HRG G+
Sbjct: 792 PLCDEPIRNVKFKIVDARIAPEPLHRGSGQ 821
Score = 83.8 bits (198), Expect = 1e-16
Identities = 41/70 (58%), Positives = 47/70 (67%)
Frame = +1
Query: 508 QIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGT 687
Q+IPT RR Y+ L A PRLMEPVY EIQ P V IY VL+RRRGHV + GT
Sbjct: 821 QMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGT 880
Query: 688 PMFIVKAYLP 717
P +IVKA+LP
Sbjct: 881 PAYIVKAFLP 890
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/73 (45%), Positives = 51/73 (69%)
Frame = +3
Query: 3 ELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP 182
EL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK N++ M A+P+
Sbjct: 648 ELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLD 707
Query: 183 DGLPEDIDEGRVN 221
GL EDI+ G V+
Sbjct: 708 RGLAEDIENGVVS 720
>At1g06220.1 68414.m00655 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 87.4 bits (207), Expect = 9e-18
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Frame = +2
Query: 254 FTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEG 421
F KY++D+ AR IW FGP+ GPNIL+D + + + +KDS+V GFQW A+EG
Sbjct: 732 FRTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDRNLMMAVKDSIVQGFQWGAREG 791
Query: 422 VMAEENLRGVRFNIYDVTLHTDAIHRGGGK 511
+ +E +R V+F I D + + +HRG G+
Sbjct: 792 PLCDEPIRNVKFKIVDARIAPEPLHRGSGQ 821
Score = 83.8 bits (198), Expect = 1e-16
Identities = 41/70 (58%), Positives = 47/70 (67%)
Frame = +1
Query: 508 QIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGT 687
Q+IPT RR Y+ L A PRLMEPVY EIQ P V IY VL+RRRGHV + GT
Sbjct: 821 QMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGT 880
Query: 688 PMFIVKAYLP 717
P +IVKA+LP
Sbjct: 881 PAYIVKAFLP 890
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/73 (45%), Positives = 51/73 (69%)
Frame = +3
Query: 3 ELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP 182
EL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK N++ M A+P+
Sbjct: 648 ELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLD 707
Query: 183 DGLPEDIDEGRVN 221
GL EDI+ G V+
Sbjct: 708 RGLAEDIENGVVS 720
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Frame = +2
Query: 254 FTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEG 421
F KY++D+ AR IW FGP+ G NIL+D + + + +KDS+V GFQW A+EG
Sbjct: 718 FRTKYDWDLLAARSIWAFGPDKQGTNILLDDTLPTEVDRNLMMGVKDSIVQGFQWGAREG 777
Query: 422 VMAEENLRGVRFNIYDVTLHTDAIHRGGGK 511
+ +E +R V+F I D + + +HRG G+
Sbjct: 778 PLCDEPIRNVKFKIVDARIAPEPLHRGSGQ 807
Score = 81.4 bits (192), Expect = 6e-16
Identities = 40/70 (57%), Positives = 47/70 (67%)
Frame = +1
Query: 508 QIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGT 687
Q+IPT RR Y+ L A PRLMEPVY EIQ P V IY VL+RRRG+V + GT
Sbjct: 807 QMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGYVTSDVPQPGT 866
Query: 688 PMFIVKAYLP 717
P +IVKA+LP
Sbjct: 867 PAYIVKAFLP 876
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/73 (46%), Positives = 51/73 (69%)
Frame = +3
Query: 3 ELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP 182
EL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK N+L M A+P+
Sbjct: 634 ELYLDSIIKDLRELYSEVQVKVADPVVSFCETVVESSSMKCFAETPNKKNKLTMIAEPLD 693
Query: 183 DGLPEDIDEGRVN 221
GL EDI+ G V+
Sbjct: 694 RGLAEDIENGVVS 706
>At3g22980.1 68416.m02898 elongation factor Tu family protein similar
to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +1
Query: 508 QIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGT 687
Q++ + A +L PR++E +Y CE+ +G +Y VL+RRR + +E G+
Sbjct: 854 QVMTAVKDACRAAVLQTNPRIVEAMYFCELNTAPEYLGPMYAVLSRRRARILKEEMQEGS 913
Query: 688 PMFIVKAYLP 717
+F V AY+P
Sbjct: 914 SLFTVHAYVP 923
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +3
Query: 3 ELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQL 122
E+HLE C+KDL+E A + ++ S P+VSYRET+ + L
Sbjct: 585 EVHLERCVKDLKERFAKVNLEVSPPLVSYRETIEGDGSNL 624
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 556 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHV 660
A PR++EP+ E+ PE +G + G LN RRG +
Sbjct: 683 AGPRMLEPIMRVEVVTPEEHLGDVIGDLNSRRGQI 717
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 544 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQ 675
C A+P ++EPV L E++ P G + G +N+R+G + Q
Sbjct: 649 CYTAARPVILEPVMLVELKVPTEFQGTVAGDINKRKGIIVGNDQ 692
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 544 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQ 675
C A+P ++EPV L E++ P G + G +N+R+G + Q
Sbjct: 649 CYTAARPVILEPVMLVELKVPTEFQGTVAGDINKRKGIIVGNDQ 692
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +1
Query: 565 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 717
+L+EP + ++ PE +G + +L +RRG +F+ V ++ +P
Sbjct: 473 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQMFDMQGVGSEGTTFLRYKIP 523
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +1
Query: 565 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 717
+L+EP + ++ PE +G + +L +RRG +F+ V ++ +P
Sbjct: 472 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQMFDMQGVGSEGTTFLRYKIP 522
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 108 ESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDI 203
E + LCL PN+H + + A+ +P LPE +
Sbjct: 44 EKENLCLYGHPNEHWEVNLPAEEVPPELPEPV 75
>At2g25730.1 68415.m03084 expressed protein
Length = 2464
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +3
Query: 297 FGALAPRVPAPTSWSIAPKEFSTSMKLRTLLWLDSSGPLRKE 422
F L P V A W + P + +T KL LLW S LR E
Sbjct: 422 FPRLRPLV-ASMGWDLLPGKTATRRKLMRLLWTSDSQALRLE 462
>At3g17310.2 68416.m02213 methyltransferase family protein similar
to cytosine methyltransferase (GI:7658293) [Arabidopsis
thaliana]
Length = 710
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +3
Query: 129 SKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLQKSTNTMLPKPVRFGAL 308
S S + L ++ P + + IDE N +DDF+ L KST T P P G +
Sbjct: 50 SSSGSNVKSLLIEMGFCPTLVQKAIDE---NGQDDFELLLEILTKSTETEPPGPSFHGLM 106
Query: 309 APRVPAP 329
P+ P P
Sbjct: 107 EPK-PEP 112
>At3g17310.1 68416.m02212 methyltransferase family protein similar
to cytosine methyltransferase (GI:7658293) [Arabidopsis
thaliana]
Length = 710
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +3
Query: 129 SKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLQKSTNTMLPKPVRFGAL 308
S S + L ++ P + + IDE N +DDF+ L KST T P P G +
Sbjct: 50 SSSGSNVKSLLIEMGFCPTLVQKAIDE---NGQDDFELLLEILTKSTETEPPGPSFHGLM 106
Query: 309 APRVPAP 329
P+ P P
Sbjct: 107 EPK-PEP 112
>At4g25190.1 68417.m03626 hypothetical protein contains Pfam
profile: PF04484 family of unknown function (DUF566)
Length = 443
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 195 EDIDEGRVNPRDDFKTRARYLQKSTNTMLPKPVRFGALAPRVPAPTSWSIAPKEFST 365
++I+ GR R+ F ARYL++ T + P +P++W+++P ST
Sbjct: 91 QEINNGR--SRESF---ARYLEQRTRGSPRSNASSRGVKPGASSPSAWALSPGRLST 142
>At5g64813.1 68418.m08152 GTP-binding protein-related contains weak
similarity to Ras-related protein Rab-27A (Rab-27)
(GTP-binding protein Ram) (Swiss-Prot:P51159) [Homo
sapiens]
Length = 342
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 249 RYLQKSTNTMLPKPVRFGALAPRVPAPTSWSIAPKEFSTSMKL 377
RY +++ N +R + +PA + WSI+P S+S +L
Sbjct: 218 RYDKEALNKFFRMLIRRRYFSDELPAASPWSISPVPTSSSQRL 260
>At5g38500.1 68418.m04654 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 411
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 36 EEDHACIPIKKSDPVVSYRETVAEESD--QLCLSKSPNKHNRLFMKAQPMPDGL 191
EE + +K + S ++TV+EE D + LS P K +K Q P+G+
Sbjct: 25 EEQRRRLLAEKREDSKSQKKTVSEEDDSEKRFLSHVPRKKRSSLVKRQQKPNGV 78
>At5g29070.1 68418.m03617 expressed protein
Length = 307
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 567 TGLSS*QTCIQASSSCWNDLPPPL-WMASVWSVTS*MLNRTPRKFSSAITPSLAAH 403
TG S TC + + SC P P + S WS+T M+ TP S+ + P+ AH
Sbjct: 121 TGPESSPTC-RPTGSCSVAAPQPQNFGRSTWSMTWSMVQHTP--ISAKLRPARVAH 173
>At5g07990.1 68418.m00930 flavonoid 3'-monooxygenase / flavonoid
3'-hydroxylase (F3'H) / cytochrome P450 75B1 (CYP75B1) /
transparent testa 7 protein (TT7) identical to SP|Q9SD85
Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid
3'-hydroxylase) (AtF3'H) (Cytochrome P450 75B1)
(TRANSPARENT TESTA 7 protein) {Arabidopsis thaliana};
similar to gi:10334806, gi:10334808
Length = 513
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 311 PEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEE 436
P G G I S G++ + + ++V GF W GV E+
Sbjct: 437 PFGAGRRICAGLSLGLRTIQFLTATLVQGFDWELAGGVTPEK 478
>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase PG1 [Glycine max]
GI:5669846; contains PF00295: Glycosyl hydrolases family
28
Length = 444
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +3
Query: 648 SWSRFRRVPGGRY-TYVHCEGL 710
S+ R R +PGGRY +++H +GL
Sbjct: 123 SYGRGRELPGGRYMSFIHGDGL 144
>At3g42790.1 68416.m04474 PHD finger family protein contains
PHD-finger domain, INTERPRO:IPR001965
Length = 250
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 12 LEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGL 191
+E KD + I + V + + E + LCL PN+ + + A+ +P L
Sbjct: 13 VEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPEL 72
Query: 192 PE 197
PE
Sbjct: 73 PE 74
>At1g78310.1 68414.m09126 VQ motif-containing protein contains
PF05678: VQ motif
Length = 311
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = -2
Query: 462 MLNRTPRKFSSAITPSLAAHWNPATTESLISLRY*TPLEQSTRMLGPVPSGPKHQILRAS 283
++NR P + A+ P + H N T +LR PL L P+P P H +
Sbjct: 136 VINRPPGLLNDALIPQGSHHMNQNWTGVGFNLRPTAPLSP----LPPLP--PVHAAAESP 189
Query: 282 VTSYSYFSVNT 250
V+SY + N+
Sbjct: 190 VSSYMRYLQNS 200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,463,824
Number of Sequences: 28952
Number of extensions: 397843
Number of successful extensions: 1102
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -