Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10700
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   6.6  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.8  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    25   8.8  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -2

Query: 190 LVFIECQLT---RFFLSGHCTFSFRHLSIASAGFRSLLFSSFTLRTGFV 53
           L F+ C +    RF L      +F+ L I+   F  LLF  F L  GFV
Sbjct: 167 LTFLTCVVIAYLRFALRTMSFSNFKELVISLTYFWGLLFVIFLLGNGFV 215


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 506 SPGTASPRDPPKSTTARISPLSA 574
           SPG+A+ +  P S T + +P+SA
Sbjct: 568 SPGSATTKPTPGSATTKPTPVSA 590


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 530 DPPKSTTARISPLSARLAVSLDS 598
           DPP  TTA +S  + RL+ S  S
Sbjct: 63  DPPDETTATLSATNRRLSTSQQS 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,819
Number of Sequences: 5004
Number of extensions: 28924
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)