Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10700
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0254 - 23951495-23951902,23952000-23952155,23952344-239524... 33 0.24
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 32 0.32
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558... 30 1.7
05_03_0423 + 13792424-13792564,13792712-13792944,13793681-137937... 29 2.2
11_01_0732 + 6065852-6066531,6067066-6067141,6067231-6067357,606... 29 3.0
10_08_0271 - 16382655-16384451 29 3.0
04_04_0256 + 23974297-23974387,23974824-23974942,23975619-239764... 29 3.9
04_03_1022 - 21778315-21779007 28 5.2
10_08_0270 + 16378878-16380566 28 6.8
01_05_0624 + 23772613-23774671,23774737-23775596 28 6.8
04_04_0347 + 24564589-24565296 25 8.3
09_04_0637 - 19153136-19153513,19153607-19153759,19153857-191546... 27 9.0
>04_04_0254 -
23951495-23951902,23952000-23952155,23952344-23952485,
23952772-23953160,23953833-23953948,23954290-23954371
Length = 430
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 331 RQFPHHHHGHLPSCVPTEPGFSTGSSFT-LTC 239
R P HHHGHL S T GFS+ S LTC
Sbjct: 312 RHIPEHHHGHLKSVKIT--GFSSAKSLVELTC 341
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 349 RPDRIPRQFPHHHHGHLPSCVPTEP 275
+P + P HHHH H PS P+ P
Sbjct: 8 QPPQTPPSLDHHHHHHTPSVGPSSP 32
>04_04_1636 +
34951841-34954322,34954440-34954627,34955737-34955838,
34956101-34956177,34956258-34956319,34956504-34956511
Length = 972
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 328 QFPHHHHGHLPSCVPTEP 275
Q HH HGHLP+ P +P
Sbjct: 190 QHQHHGHGHLPASFPDQP 207
>05_03_0423 +
13792424-13792564,13792712-13792944,13793681-13793756,
13794003-13794089,13794500-13794553,13794654-13794695,
13794818-13794896,13795059-13795129,13795235-13795297
Length = 281
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 169 LTRFFLSGHCTFSFRHLSIASAGFRSLL 86
LT +FLS F+FR S+A AGF L+
Sbjct: 236 LTAWFLSETAPFNFRGFSLACAGFAMLI 263
>11_01_0732 +
6065852-6066531,6067066-6067141,6067231-6067357,
6068084-6068289
Length = 362
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 379 ASGDPRAVDSRPDRIPRQFPHHHHGH 302
A+ P A D P P+ PHH HGH
Sbjct: 23 AAAGPYAGDHGPIARPQGAPHHRHGH 48
>10_08_0271 - 16382655-16384451
Length = 598
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 160 FFLSGHCTFSFRHLSIASAGFRSLLFSSFTLRTGFVQLVE 41
FF +G T+ FR L+ AG+ S LFS ++ +VE
Sbjct: 301 FFTAGRTTWDFRRLNDGDAGWGSKLFSLPAIKNMTALVVE 340
>04_04_0256 +
23974297-23974387,23974824-23974942,23975619-23976437,
23976626-23976781,23976878-23977252
Length = 519
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 331 RQFPHHHHGHLPSCVPTEPGFSTGSSFT-LTC 239
R P H HGHL S T GFS+ S LTC
Sbjct: 413 RHIPGHRHGHLKSVKIT--GFSSAKSLVELTC 442
>04_03_1022 - 21778315-21779007
Length = 230
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -2
Query: 337 IPRQFPHHHHGHLPSCVP-TEPG 272
IP PHHHH P+ P T PG
Sbjct: 85 IPPHHPHHHHPPTPAPAPSTTPG 107
>10_08_0270 + 16378878-16380566
Length = 562
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 160 FFLSGHCTFSFRHLSIASAGFRSLLFSSFTLRTGFVQLVE 41
FF +G T+ FR L+ AG+ S LFS ++ +VE
Sbjct: 265 FFTAGLITWDFRRLADGDAGWGSKLFSLPAIKNMTALVVE 304
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 307 GHLPSCVPTEPGFSTGSSF 251
G LP C+PTE STG SF
Sbjct: 618 GELPHCLPTELKPSTGGSF 636
>04_04_0347 + 24564589-24565296
Length = 235
Score = 24.6 bits (51), Expect(2) = 8.3
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -2
Query: 367 PRAVDSRPDRIPRQFPHHHHGH 302
P R D+ HHHHGH
Sbjct: 80 PAPAPVRDDKPSPSHHHHHHGH 101
Score = 21.4 bits (43), Expect(2) = 8.3
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = -2
Query: 319 HHHHGHLPSCVP 284
HHHH H + P
Sbjct: 101 HHHHRHATATAP 112
>09_04_0637 -
19153136-19153513,19153607-19153759,19153857-19154675,
19155068-19155174,19155434-19155548
Length = 523
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 331 RQFPHHHHGHLPSCVPTEPGFSTGSSFT-LTC 239
RQ P +HH HL S T GF + S LTC
Sbjct: 417 RQMPEYHHEHLKSV--TISGFCSAKSLVELTC 446
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,686,901
Number of Sequences: 37544
Number of extensions: 230514
Number of successful extensions: 1038
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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