Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10700
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 30 1.3
SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26) 29 3.0
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23) 29 3.0
SB_49088| Best HMM Match : 2_5_RNA_ligase (HMM E-Value=3.1) 29 3.0
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 28 7.0
SB_38149| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_30851| Best HMM Match : C2 (HMM E-Value=0.0042) 27 9.2
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06) 27 9.2
SB_31629| Best HMM Match : DEAD (HMM E-Value=1.2e-05) 27 9.2
>SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 34.7 bits (76), Expect = 0.061
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Frame = +2
Query: 2 GAGPHNWGTIKDDLDE---LNKXXXXXXXXXXK----APEAGAGDGQXXXXXXXXXXXXX 160
G G NWG D +E N+ +P+ A +GQ
Sbjct: 192 GGGQFNWGNPADTEEEGVVYNQEKPDVEGSPEPGSPGSPKPDAEEGQEQNEEGDAEKEEE 251
Query: 161 XXXLTLDEYKALRNAQRTAPQYNLRKAGEGE 253
++L+E+K L+N R + LRK GEGE
Sbjct: 252 QKEMSLEEWKELQNKYRAKMSFELRKPGEGE 282
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 488 SRRSWRSPGTASPRDPPKSTTARISPLSARLAVS 589
SR SP + +PRD P S R SPLS VS
Sbjct: 185 SRNPRDSPASRNPRDSPSSRNPRDSPLSRNPRVS 218
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 488 SRRSWRSPGTASPRDPPKSTTARISP 565
SR SP + +PRD P S R+SP
Sbjct: 194 SRNPRDSPSSRNPRDSPLSRNPRVSP 219
>SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26)
Length = 534
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 301 LPSCVPTEPGFSTGSSFTLTCLPQIVLRSG 212
L CV +PG S G F + C P + L +G
Sbjct: 459 LRDCVTLKPGTSVGKLFNIMCNPPVSLLAG 488
>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
Length = 434
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -1
Query: 251 HPHLP-SSNCTAERCVARCVKPCIHRVSTHAVLP 153
HPH+P +S T +AR P H THA P
Sbjct: 187 HPHIPHASTTTTHPYIARASTPTTHPHITHASTP 220
>SB_49088| Best HMM Match : 2_5_RNA_ligase (HMM E-Value=3.1)
Length = 410
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 355 DSRPDRIPRQFPHHHHGHLPSCVPTE 278
D PD+IP Q P H H+P +P +
Sbjct: 358 DQIPDQIPDQIPDQIHCHIPYQIPDQ 383
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 293 RRKVTVVMMRKLTRNTIWPTIHSAWVARSVCWALSSHLVTVR 418
R K V+ + + RN+ W +S WV R+ W + + VR
Sbjct: 418 RNKWVVIRNKWVDRNSKWVDRNSRWVVRNSKWVVRNSKWVVR 459
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 284 WNARRKVTVVMMRK-LTRNTIWPTIHSAWVARSVCWAL 394
W R VV K + RN+ W HS WV R+ W +
Sbjct: 435 WVDRNSRWVVRNSKWVVRNSKWVVRHSKWVVRNSKWVV 472
>SB_38149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 510 PVQRHHVTRRSRRQQGFPLSQLDSQ 584
P RH V RRSR+Q P+ + DS+
Sbjct: 109 PASRHGVGRRSRKQDMSPVKKEDSR 133
>SB_30851| Best HMM Match : C2 (HMM E-Value=0.0042)
Length = 889
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 506 SPGTASPRDPPKSTTARISPLSARLAVSLDSSPFRS 613
S GT P DP + +P +A+ + +LD S FRS
Sbjct: 665 SMGTPRPIDPSYFLSVNNTPAAAKTSSALDVSRFRS 700
>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
Length = 2009
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = -1
Query: 254 LH-PHLPSSNCTAERCVARCVKPCIHRVSTHAVLPQRALHVQFQALVH 114
LH PH P + + ARC+ HRV + P RA + H
Sbjct: 431 LHLPHTPPRAASTQYATARCIYLIRHRVPHLPLTPSRATSSPYATARH 478
>SB_31629| Best HMM Match : DEAD (HMM E-Value=1.2e-05)
Length = 415
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 260 LKLHPHLPSSNCTAERCVARCVKPCIHRVSTHAVLPQRALHVQFQA 123
LK HPH S N C+ ++P H+ + LP+ VQ+Q+
Sbjct: 371 LKHHPHCLSPNNNNNNCIRTRLEP--HKSAKLKSLPEITAIVQYQS 414
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,755
Number of Sequences: 59808
Number of extensions: 255771
Number of successful extensions: 1037
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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