Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10700
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    33   0.12 
AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical ...    33   0.16 
AF022974-3|AAC48037.1|  346|Caenorhabditis elegans Seven tm rece...    32   0.38 
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    30   1.5  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    30   1.5  
AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical...    29   2.7  
Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL110485-27|CAB60369.3|  515|Caenorhabditis elegans Hypothetical...    28   6.1  

>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +2

Query: 173 TLDEYKALRNAQRTAPQYNLRKAGEGEA*ASGK 271
           TL E+KA   A   AP++N RKAGEG A   GK
Sbjct: 254 TLKEFKAAAKAD--APKFNTRKAGEGAADTFGK 284


>AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical
           protein Y67H2A.10 protein.
          Length = 608

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 328 QFPHHHHGHLPSCVPTEPGFSTGSSFTLTCLPQIVLRSGA 209
           Q  HHHH  +P+  P EP  S+G+  T T  P   L  G+
Sbjct: 214 QQQHHHHQQIPTSAP-EPSVSSGTPTTGTPAPNTPLAQGS 252


>AF022974-3|AAC48037.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 207 protein.
          Length = 346

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -3

Query: 384 QTLLATHALWIVGQIVFLVSFLIITTVTFL-LAFQQNQVFPLAQASPSPAFLKLYCGAVR 208
           QTL+    ++I G  +FL+SFL I   +F  +      +FP     P+   +K Y  ++R
Sbjct: 255 QTLIPLFLMYIPGCAMFLLSFLTIDVGSFTGIVTVTIALFPAVDPLPTLIMVKCYRNSLR 314

Query: 207 CALR 196
             LR
Sbjct: 315 SYLR 318


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 254  LHPHLPSSNCTAERCVARCVKPCIHRVSTHA 162
            L+P  P  NC + R V  C KP ++  S HA
Sbjct: 1655 LNPSRPGRNCLSYRGVNECEKPELNECSPHA 1685


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 254  LHPHLPSSNCTAERCVARCVKPCIHRVSTHA 162
            L+P  P  NC + R V  C KP ++  S HA
Sbjct: 1655 LNPSRPGRNCLSYRGVNECEKPELNECSPHA 1685


>AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.7 protein.
          Length = 474

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -2

Query: 391 CPTNASGDPRAVDSRPDRIPRQFPHHHHGHLPSCVPTEPG 272
           CP  +S         P +I   F H  H   PSC+PT  G
Sbjct: 91  CPKPSSESAFPFPISPTQIDLPFGHTAHDRKPSCLPTPRG 130


>Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical
           protein F33H1.3 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 373 GDPRAVDSRPDRIPRQFPHHHHGHLP 296
           G P + +S P R+P    HHHH H P
Sbjct: 233 GPPSSYNSMPTRMP----HHHHHHHP 254


>AL110485-27|CAB60369.3|  515|Caenorhabditis elegans Hypothetical
           protein Y46G5A.26a protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 363 ALWIVGQIVFLVSFLIITTVTFLLAFQQNQVFP 265
           +LW+  +  F     II T+TFLL F  N+V P
Sbjct: 307 SLWMENETSFQDMISIILTITFLL-FSYNEVMP 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,995,667
Number of Sequences: 27780
Number of extensions: 179142
Number of successful extensions: 790
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)