Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10700
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60620.1 68416.m06783 phosphatidate cytidylyltransferase fami...    33   0.20 
At2g45150.3 68415.m05621 phosphatidate cytidylyltransferase fami...    30   1.4  
At2g45150.1 68415.m05620 phosphatidate cytidylyltransferase fami...    30   1.4  
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    29   3.3  
At1g23020.1 68414.m02876 ferric-chelate reductase, putative simi...    28   5.7  
At4g34310.2 68417.m04876 expressed protein                             27   7.5  
At4g34310.1 68417.m04877 expressed protein                             27   7.5  
At3g18485.1 68416.m02349 hypothetical protein                          27   7.5  
At1g80400.1 68414.m09412 zinc finger (C3HC4-type RING finger) fa...    27   7.5  
At5g06370.1 68418.m00713 NC domain-containing protein contains P...    27   10.0 
At2g45050.1 68415.m05608 zinc finger (GATA type) family protein ...    27   10.0 

>At3g60620.1 68416.m06783 phosphatidate cytidylyltransferase family
           protein contains Pfam profile: PF01148 phosphatidate
           cytidylyltransferase
          Length = 399

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -3

Query: 381 TLLATHALWIVGQIVFLVSFL-IITTVTFLLAFQQNQVF---PLAQASPSPAFLKLYCGA 214
           T+L   A W VG +  L+SF  II + TF  AF   + F   PL   SP   +   + G 
Sbjct: 256 TILGGQAHWTVGLVAILISFCGIIASDTF--AFLGGKAFGRTPLISISPKKTWEGAFAGL 313

Query: 213 VRC 205
           V C
Sbjct: 314 VGC 316


>At2g45150.3 68415.m05621 phosphatidate cytidylyltransferase family
           protein contains Pfam profile: PF01148 phosphatidate
           cytidylyltransferase
          Length = 382

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -3

Query: 378 LLATHALWIVGQIVFLVSFL-IITTVTFLLAFQQNQVF---PLAQASPSPAFLKLYCGAV 211
           LL   A W VG +  L+SF  +I T TF  AF   + F   PL   SP   +     G V
Sbjct: 236 LLGGQAHWTVGLVATLISFSGVIATDTF--AFLGGKTFGRTPLTSISPKKTWEGTIVGLV 293

Query: 210 RC 205
            C
Sbjct: 294 GC 295


>At2g45150.1 68415.m05620 phosphatidate cytidylyltransferase family
           protein contains Pfam profile: PF01148 phosphatidate
           cytidylyltransferase
          Length = 391

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -3

Query: 378 LLATHALWIVGQIVFLVSFL-IITTVTFLLAFQQNQVF---PLAQASPSPAFLKLYCGAV 211
           LL   A W VG +  L+SF  +I T TF  AF   + F   PL   SP   +     G V
Sbjct: 245 LLGGQAHWTVGLVATLISFSGVIATDTF--AFLGGKTFGRTPLTSISPKKTWEGTIVGLV 302

Query: 210 RC 205
            C
Sbjct: 303 GC 304


>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
 Frame = -2

Query: 388 PTNASGDPRAVDSRPDRIPRQFPHHHHGH-----LPSCVPTEPGFSTGSSFT 248
           P  +S    +      + P   PHHHH H      PS  P   GF+  S+ T
Sbjct: 316 PATSSTPSPSPQPETHQYPHHHPHHHHHHHELAPEPSLSPPTKGFAPASAPT 367


>At1g23020.1 68414.m02876 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 693

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 367 PRAVDSRPDRIPRQFPHHHHGHLPSCVPTEPGFSTGSSFTLTCLPQ 230
           P  ++S PD++  +F + H+G  P+      G    S   L C P+
Sbjct: 621 PLMIESSPDQLLPEFTNIHYGERPNLNKLLVGLKGSSVGVLVCGPR 666


>At4g34310.2 68417.m04876 expressed protein 
          Length = 1035

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = -2

Query: 397 TQCPTNASGDPRAVDSRPDRIPRQFPHHHHGHLPSCVPTEP--GFSTGSSFTLT 242
           +  PTN S  P     +P   P   PH   G L S     P   FS  S F L+
Sbjct: 27  SSAPTNGSSGPSLNLIKPKLTPSPPPHQSRGLLRSIYTVSPSSSFSKKSVFVLS 80


>At4g34310.1 68417.m04877 expressed protein 
          Length = 1228

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = -2

Query: 397 TQCPTNASGDPRAVDSRPDRIPRQFPHHHHGHLPSCVPTEP--GFSTGSSFTLT 242
           +  PTN S  P     +P   P   PH   G L S     P   FS  S F L+
Sbjct: 27  SSAPTNGSSGPSLNLIKPKLTPSPPPHQSRGLLRSIYTVSPSSSFSKKSVFVLS 80


>At3g18485.1 68416.m02349 hypothetical protein
          Length = 386

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 328 QFPHHHHGHLPSCVPTEPGFSTGSSF 251
           +FPH+H+G +   +P +PG +   +F
Sbjct: 133 EFPHNHNGKVYPRIPAQPGPARRDAF 158


>At1g80400.1 68414.m09412 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q90972 RING finger
           protein 13 {Gallus gallus}; contains Pfam profile:
           PF00097 zinc finger, C3HC4 type (RING finger)
          Length = 407

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 114 MDKCLKLNVQCPLRKNRV 167
           +DK LK+N  CPL KN V
Sbjct: 382 VDKWLKINATCPLCKNEV 399


>At5g06370.1 68418.m00713 NC domain-containing protein contains Pfam
           domain, PF04970: NC domain
          Length = 259

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 322 PHHHHGHLPSCVPTEPGFSTGSSFTLTC 239
           P  +H H P+CVP   G    SS  L C
Sbjct: 65  PSRNHTHCPTCVPPNEGHGVVSS-CLNC 91


>At2g45050.1 68415.m05608 zinc finger (GATA type) family protein
           identical to cDNA GATA transcription factor 2 GI:2959731
          Length = 264

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 382 NASGDPRAVDSRPDRIPRQFPHHHHGHLPS 293
           ++SG   A  S     P Q P  HH HLPS
Sbjct: 29  SSSGGSTAATSSSSFPPPQNPSFHHHHLPS 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,476,187
Number of Sequences: 28952
Number of extensions: 166776
Number of successful extensions: 689
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)