Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10699X
(332 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5KQ17 Cluster: Exosome complex exonuclease rrp4, putat... 56 2e-07
UniRef50_Q09704 Cluster: Probable exosome complex exonuclease rr... 56 2e-07
UniRef50_Q13868 Cluster: Exosome complex exonuclease RRP4; n=16;... 50 8e-06
UniRef50_P38792 Cluster: Exosome complex exonuclease RRP4; n=12;... 49 2e-05
UniRef50_Q2U564 Cluster: Exosomal 3'-5' exoribonuclease complex;... 46 2e-04
UniRef50_Q8LSI3 Cluster: Exonuclease; n=1; Phytophthora sojae|Re... 44 5e-04
UniRef50_Q95XD0 Cluster: Exosome (Multiexonuclease complex) comp... 44 7e-04
UniRef50_UPI00006CC357 Cluster: hypothetical protein TTHERM_0058... 42 0.002
UniRef50_Q9ZVT7 Cluster: F15K9.4 protein; n=11; Magnoliophyta|Re... 42 0.002
UniRef50_Q870P5 Cluster: Related to 3'->5' exoribonuclease; n=6;... 41 0.006
UniRef50_Q4UDE6 Cluster: Putative uncharacterized protein; n=2; ... 39 0.019
UniRef50_UPI000049854C Cluster: exosome complex exonuclease RRP4... 39 0.025
UniRef50_A4RY84 Cluster: Predicted protein; n=2; Ostreococcus|Re... 38 0.059
UniRef50_Q54EV5 Cluster: Putative uncharacterized protein; n=1; ... 38 0.059
UniRef50_Q4P5D8 Cluster: Putative uncharacterized protein; n=1; ... 37 0.078
UniRef50_A7APY0 Cluster: Putative uncharacterized protein; n=1; ... 35 0.41
UniRef50_A5KAJ3 Cluster: Exosome complex exonuclease rrp4, putat... 34 0.72
UniRef50_Q7RS33 Cluster: Plasmodium falciparum antigen 332; n=4;... 33 0.96
UniRef50_A7SIE5 Cluster: Predicted protein; n=1; Nematostella ve... 33 0.96
UniRef50_A0DQZ2 Cluster: Chromosome undetermined scaffold_6, who... 33 0.96
UniRef50_A0CIG6 Cluster: Chromosome undetermined scaffold_19, wh... 33 0.96
UniRef50_A2Q2I9 Cluster: Nucleic acid-binding, OB-fold; n=1; Med... 33 1.3
UniRef50_Q8SUC4 Cluster: Putative uncharacterized protein ECU10_... 33 1.7
UniRef50_Q8TZ79 Cluster: Predicted RNA-binding protein; n=1; Met... 33 1.7
UniRef50_Q98QW6 Cluster: Putative uncharacterized protein MYPU_2... 32 2.2
UniRef50_Q8GXX9 Cluster: Putative uncharacterized protein At5g38... 32 2.9
UniRef50_A2RVT9 Cluster: At5g38890; n=6; Magnoliophyta|Rep: At5g... 32 2.9
UniRef50_Q4QFY3 Cluster: Exosome complex exonuclease, putative; ... 32 2.9
UniRef50_O30033 Cluster: Putative uncharacterized protein; n=1; ... 32 2.9
UniRef50_A2DET3 Cluster: Putative uncharacterized protein; n=1; ... 31 3.9
UniRef50_A5UMY4 Cluster: Predicted RNA-binding protein; n=1; Met... 31 3.9
UniRef50_UPI00015BB1CE Cluster: RNA-binding protein (consists of... 31 5.1
UniRef50_A7FCW4 Cluster: Transporter, divalent anion:Na+ symport... 31 6.7
UniRef50_Q9Y3B2 Cluster: 3'-5' exoribonuclease CSL4 homolog; n=2... 31 6.7
UniRef50_Q4XKB2 Cluster: Putative uncharacterized protein; n=1; ... 30 8.9
UniRef50_A5E3Q2 Cluster: Putative uncharacterized protein; n=1; ... 30 8.9
UniRef50_O29758 Cluster: Probable exosome complex RNA-binding pr... 30 8.9
>UniRef50_Q5KQ17 Cluster: Exosome complex exonuclease rrp4,
putative; n=1; Filobasidiella neoformans|Rep: Exosome
complex exonuclease rrp4, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 331
Score = 56.0 bits (129), Expect = 2e-07
Identities = 23/41 (56%), Positives = 34/41 (82%)
Frame = +1
Query: 136 TPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLIA 258
+PGEVIT +++MRGHGTY E+ + +SVAG +++VNKLI+
Sbjct: 52 SPGEVITSSKEYMRGHGTYVEESNVVSSVAGTIERVNKLIS 92
Score = 39.1 bits (87), Expect = 0.019
Identities = 14/23 (60%), Positives = 21/23 (91%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEV 326
+RPL+SRY E+GD+V+GR++EV
Sbjct: 93 VRPLRSRYTPEVGDLVIGRIVEV 115
>UniRef50_Q09704 Cluster: Probable exosome complex exonuclease rrp4;
n=1; Schizosaccharomyces pombe|Rep: Probable exosome
complex exonuclease rrp4 - Schizosaccharomyces pombe
(Fission yeast)
Length = 329
Score = 56.0 bits (129), Expect = 2e-07
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +1
Query: 136 TPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLIA 258
TPG+++T FMRGHGTY ED + ASVAG +Q+VNKLI+
Sbjct: 59 TPGQLVTDDPQFMRGHGTYFEDGGIYASVAGSVQRVNKLIS 99
Score = 38.3 bits (85), Expect = 0.034
Identities = 13/24 (54%), Positives = 22/24 (91%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEVQ 329
++PL+S+YV EIGD+++G++ EVQ
Sbjct: 100 VKPLRSKYVPEIGDLIIGKIAEVQ 123
>UniRef50_Q13868 Cluster: Exosome complex exonuclease RRP4; n=16;
Eutheria|Rep: Exosome complex exonuclease RRP4 - Homo
sapiens (Human)
Length = 293
Score = 50.4 bits (115), Expect = 8e-06
Identities = 30/70 (42%), Positives = 40/70 (57%)
Frame = +1
Query: 46 LEMVSHVSIKLASERVNHSVASNNDPPRFYTPGEVITGIQDFMRGHGTYAEDDCLKASVA 225
+EM V+ K SER+ + PG+ IT FMRGHGTY ++ L ASVA
Sbjct: 3 MEMRLPVARKPLSERLGRDTKKH-----LVVPGDTITTDTGFMRGHGTYMGEEKLIASVA 57
Query: 226 GVMQKVNKLI 255
G +++VNKLI
Sbjct: 58 GSVERVNKLI 67
Score = 47.2 bits (107), Expect = 7e-05
Identities = 17/26 (65%), Positives = 24/26 (92%)
Frame = +3
Query: 255 CIRPLKSRYVGEIGDVVVGRVLEVQQ 332
C++ LK+RY+GE+GD+VVGR+ EVQQ
Sbjct: 68 CVKALKTRYIGEVGDIVVGRITEVQQ 93
>UniRef50_P38792 Cluster: Exosome complex exonuclease RRP4; n=12;
Saccharomycetales|Rep: Exosome complex exonuclease RRP4
- Saccharomyces cerevisiae (Baker's yeast)
Length = 359
Score = 49.2 bits (112), Expect = 2e-05
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +1
Query: 91 VNHSVASNNDPPRFYTPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLIA 258
VN + S +D + TPGE++T +MRGHGTY D+ +SVAG + +VN+L++
Sbjct: 42 VNSASKSESDS-QIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLS 96
Score = 31.9 bits (69), Expect = 2.9
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +3
Query: 264 PLKSRYVGEIGDVVVGRVLEV 326
PLK RY E GD VVGR+ EV
Sbjct: 99 PLKGRYAPETGDHVVGRIAEV 119
>UniRef50_Q2U564 Cluster: Exosomal 3'-5' exoribonuclease complex;
n=16; Pezizomycotina|Rep: Exosomal 3'-5' exoribonuclease
complex - Aspergillus oryzae
Length = 392
Score = 45.6 bits (103), Expect = 2e-04
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = +1
Query: 136 TPGEVITGIQDFMRGHGTYAE--DDCLKASVAGVMQKVNKLIA 258
TPGE++T +MRGHGTY + A+VAG +QK NKL++
Sbjct: 61 TPGEIVTDDPQWMRGHGTYINPLSTSIIATVAGTVQKTNKLLS 103
Score = 39.1 bits (87), Expect = 0.019
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEVQ 329
++PL++RY EIGD+VVGR++EVQ
Sbjct: 104 VQPLRARYTPEIGDLVVGRIVEVQ 127
>UniRef50_Q8LSI3 Cluster: Exonuclease; n=1; Phytophthora sojae|Rep:
Exonuclease - Phytophthora sojae
Length = 330
Score = 44.4 bits (100), Expect = 5e-04
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Frame = +1
Query: 136 TPGEVI-TGIQDFMRGHGTYAED-DCLKASVAGVMQKVNKLI 255
TPG+VI T F+RGHGTY + L ASVAGV++KVN+LI
Sbjct: 70 TPGQVISTDTGAFLRGHGTYLSGRNELVASVAGVVEKVNQLI 111
Score = 41.5 bits (93), Expect = 0.004
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEV 326
+RPL SRY+GE+GD+VVGRV +V
Sbjct: 113 VRPLVSRYIGEVGDIVVGRVTDV 135
>UniRef50_Q95XD0 Cluster: Exosome (Multiexonuclease complex)
component protein 2; n=2; Caenorhabditis|Rep: Exosome
(Multiexonuclease complex) component protein 2 -
Caenorhabditis elegans
Length = 303
Score = 44.0 bits (99), Expect = 7e-04
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +1
Query: 100 SVASNN-DPPRFYTPGE-VITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLI 255
S A N+ D + PG V Q FMRGHGTY D + +S++GV+Q++N+L+
Sbjct: 20 SEARNDIDETKIVIPGHSVCDAPQQFMRGHGTYVRDGEIVSSLSGVVQQLNRLL 73
Score = 38.3 bits (85), Expect = 0.034
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEVQ 329
++ +K RY GE+GDVVV RV+EVQ
Sbjct: 75 VKTIKQRYAGEVGDVVVARVVEVQ 98
>UniRef50_UPI00006CC357 Cluster: hypothetical protein
TTHERM_00586540; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00586540 - Tetrahymena
thermophila SB210
Length = 309
Score = 42.3 bits (95), Expect = 0.002
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +1
Query: 139 PGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLIA 258
PG+VI + FM GHGTY E+ + +SV G + + NKL++
Sbjct: 29 PGDVIKKEKGFMNGHGTYEENGIIYSSVIGTVVQTNKLLS 68
Score = 35.5 bits (78), Expect = 0.24
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEV 326
+ PLKS Y ++GD+VVGRV+E+
Sbjct: 69 VSPLKSYYTPQVGDIVVGRVMEI 91
>UniRef50_Q9ZVT7 Cluster: F15K9.4 protein; n=11; Magnoliophyta|Rep:
F15K9.4 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 322
Score = 42.3 bits (95), Expect = 0.002
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 LAKRELKKTLEMVSHVSIKLASERVNH-SVASNNDPPRFYTPGEVITGIQDFMRGHGTYA 195
+ R+L+ L V + A ER+ S ++N+D T + F++GHGT
Sbjct: 1 MVMRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSE 60
Query: 196 EDDCLKASVAGVMQKVNKLI 255
D L A+V GV+++V+KL+
Sbjct: 61 VDGELLATVCGVVERVDKLV 80
Score = 37.5 bits (83), Expect = 0.059
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEVQQ 332
+R L++RY E+GD+VVGRV+EV Q
Sbjct: 82 VRTLRARYKPEVGDIVVGRVIEVAQ 106
>UniRef50_Q870P5 Cluster: Related to 3'->5' exoribonuclease; n=6;
Pezizomycotina|Rep: Related to 3'->5' exoribonuclease -
Neurospora crassa
Length = 387
Score = 40.7 bits (91), Expect = 0.006
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Frame = +1
Query: 106 ASNNDPPR--FYTPGEVITGIQDFMRGHGTYAE-----DDCLKASVAGVMQKVNKLIA 258
A+ N PR TPGE IT +MRGHGTY + + +S+AG++ + NKL++
Sbjct: 79 AAINSIPRSAIVTPGERITTDPQWMRGHGTYLSSASLGEQAITSSLAGIVTRTNKLLS 136
Score = 40.3 bits (90), Expect = 0.008
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEVQ 329
+RPL++RY E+GD+VVGR++EVQ
Sbjct: 137 VRPLRARYTPEVGDLVVGRIVEVQ 160
>UniRef50_Q4UDE6 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 293
Score = 39.1 bits (87), Expect = 0.019
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 139 PGEVITGIQDFM-RGHGTYAEDDCLKASVAGVMQKVNKLI 255
PG+V++ F+ +GHGTY D L+AS G ++ VN+L+
Sbjct: 10 PGDVVSSDSSFLLQGHGTYVSDKQLRASYLGSVKHVNQLV 49
Score = 30.7 bits (66), Expect = 6.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEVQ 329
+ P +YVG+IGD+V+G V +Q
Sbjct: 51 VEPFGGKYVGQIGDIVIGVVDSIQ 74
>UniRef50_UPI000049854C Cluster: exosome complex exonuclease RRP4;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: exosome
complex exonuclease RRP4 - Entamoeba histolytica
HM-1:IMSS
Length = 263
Score = 38.7 bits (86), Expect = 0.025
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +3
Query: 255 CIRPLKSRYVGEIGDVVVGRVLEV 326
C+ P+++RY G +GDVVVGR++ V
Sbjct: 53 CVNPIRARYSGNVGDVVVGRIVSV 76
>UniRef50_A4RY84 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 342
Score = 37.5 bits (83), Expect = 0.059
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 15/79 (18%)
Frame = +1
Query: 67 SIKLASERVNHSVASNNDPPRFYTPGEVITGI---QDFMRGHGT--YAEDDC-------- 207
+ K A + +++ F +PGE I GI + F+RGHGT AED+
Sbjct: 15 AFKRAKRALEQCATASSSARAFVSPGERIPGIDSSEGFLRGHGTRPIAEDNGTDGDGDDD 74
Query: 208 --LKASVAGVMQKVNKLIA 258
L A+ AGV+++VNKL++
Sbjct: 75 RGLVATTAGVVERVNKLVS 93
Score = 33.5 bits (73), Expect = 0.96
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEV 326
+R LK+RY E GDVV+GRV E+
Sbjct: 94 VRALKARYAPETGDVVLGRVKEI 116
>UniRef50_Q54EV5 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 380
Score = 37.5 bits (83), Expect = 0.059
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEV 326
++ LKSRY GE+GD++VGR+ E+
Sbjct: 132 VKALKSRYHGEVGDIIVGRITEI 154
Score = 33.1 bits (72), Expect = 1.3
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 142 GEVITGIQDFMRGHGTYAE-DDCLKASVAGVMQKVNKLIA 258
G+ I+ ++++GHGT+ + L ASV G + KV++L++
Sbjct: 92 GQTISREGEYLKGHGTFNDGSGSLVASVCGTLDKVDRLVS 131
>UniRef50_Q4P5D8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 470
Score = 37.1 bits (82), Expect = 0.078
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEV 326
+RP +SRY E+GD+V+GR+ EV
Sbjct: 203 VRPARSRYAAEVGDLVIGRITEV 225
Score = 35.9 bits (79), Expect = 0.18
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 127 RFYTPGEVITGIQDFMRGHGTY--AEDDCLKASVAGVMQKVNKLIA 258
R G I FM+GHGT+ A+ D + +S+ G +++VNKLI+
Sbjct: 157 RIAVTGGSIASSHVFMKGHGTFLSADTDEILSSMCGTVERVNKLIS 202
>UniRef50_A7APY0 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 262
Score = 34.7 bits (76), Expect = 0.41
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 139 PGEVI-TGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKL 252
PG+V+ T ++G GTY ++ L+AS G ++VN+L
Sbjct: 9 PGDVVNTRASSLLQGRGTYVDNGVLRASFLGTFKQVNQL 47
>UniRef50_A5KAJ3 Cluster: Exosome complex exonuclease rrp4,
putative; n=5; Plasmodium|Rep: Exosome complex
exonuclease rrp4, putative - Plasmodium vivax
Length = 345
Score = 33.9 bits (74), Expect = 0.72
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 139 PGEVITGIQD---FMRGHGTYAEDDCLKASVAGVMQKVNKLI 255
PGE I +D F++G G Y ED+ A + G + +NKL+
Sbjct: 53 PGEAILSKKDKGRFLKGSGLYEEDEKYFACIVGTVNYINKLV 94
Score = 30.3 bits (65), Expect = 8.9
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEV 326
+ PL+ +Y G +GD++VG++ ++
Sbjct: 96 VEPLRGKYTGAVGDLLVGKIKDI 118
>UniRef50_Q7RS33 Cluster: Plasmodium falciparum antigen 332; n=4;
Plasmodium (Vinckeia)|Rep: Plasmodium falciparum antigen
332 - Plasmodium yoelii yoelii
Length = 1092
Score = 33.5 bits (73), Expect = 0.96
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 1 VVHNSQLAKRELKKTLEMVSHVSIKLASE-RVNHSVASNNDPPRFYTPGEVITGIQDFMR 177
VV+ S+ A+ K ++VS + + ++E VN+ VAS N+ Y+ E + G +D +
Sbjct: 674 VVNESEYAEEACSKD-KIVSIIEVVNSNEFNVNNDVASENE----YS--ENVYGKEDVVS 726
Query: 178 GHGTYAEDDCLKASVAGVMQKVN 246
G YAE+ C K + +++ VN
Sbjct: 727 G-SEYAEEACSKDKIVSIIEVVN 748
>UniRef50_A7SIE5 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 214
Score = 33.5 bits (73), Expect = 0.96
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +3
Query: 276 RYVGEIGDVVVGRVLEVQQ 332
RY GEIGDVVVGR+ EV Q
Sbjct: 40 RYNGEIGDVVVGRITEVGQ 58
>UniRef50_A0DQZ2 Cluster: Chromosome undetermined scaffold_6, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_6,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 186
Score = 33.5 bits (73), Expect = 0.96
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 127 RFYTPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLIA 258
+ Y PGE+I + G GTY +DD + AS+ G + +LI+
Sbjct: 3 KVYFPGELIKHKNELQSGIGTYVKDDKIFASMKGSLTMNEQLIS 46
>UniRef50_A0CIG6 Cluster: Chromosome undetermined scaffold_19, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_19,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 274
Score = 33.5 bits (73), Expect = 0.96
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 112 NNDPPRFYTPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLI 255
++D + PG++++ F+ G TY E + +S G + + NKLI
Sbjct: 8 HHDKKEVFLPGDLLSDETGFISGTNTYEEQGKIFSSTTGTINQTNKLI 55
>UniRef50_A2Q2I9 Cluster: Nucleic acid-binding, OB-fold; n=1;
Medicago truncatula|Rep: Nucleic acid-binding, OB-fold -
Medicago truncatula (Barrel medic)
Length = 138
Score = 33.1 bits (72), Expect = 1.3
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEVQQ 332
+R L SRY + GD+V+GRV+EV Q
Sbjct: 44 VRSLLSRYKPKAGDIVIGRVIEVGQ 68
>UniRef50_Q8SUC4 Cluster: Putative uncharacterized protein
ECU10_1340; n=1; Encephalitozoon cuniculi|Rep: Putative
uncharacterized protein ECU10_1340 - Encephalitozoon
cuniculi
Length = 223
Score = 32.7 bits (71), Expect = 1.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 139 PGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLI 255
PGE + + ++RGHGT C+ ++ G + NKL+
Sbjct: 7 PGEDVLESEGYIRGHGTQLRGSCIASTYFGRPRITNKLV 45
>UniRef50_Q8TZ79 Cluster: Predicted RNA-binding protein; n=1;
Methanopyrus kandleri|Rep: Predicted RNA-binding protein
- Methanopyrus kandleri
Length = 196
Score = 32.7 bits (71), Expect = 1.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 118 DPPRFYTPGEVITGIQDFMRGHGTYAEDDCLKASVAG 228
+P +F PG+ IT + F G GTY + ++A++ G
Sbjct: 6 EPGKFVLPGDKITVAEAFYPGPGTYEDGGVVRAAITG 42
>UniRef50_Q98QW6 Cluster: Putative uncharacterized protein
MYPU_2440; n=1; Mycoplasma pulmonis|Rep: Putative
uncharacterized protein MYPU_2440 - Mycoplasma pulmonis
Length = 270
Score = 32.3 bits (70), Expect = 2.2
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 279 NDSSMGECNKFIYFLHNPSNRCF*AIIFCVSSVASHKILYPSYDF 145
NDSSM E KF Y + N + F SSV+ H + YDF
Sbjct: 218 NDSSMFELVKFSYAMDNSNQNIKNQAKFFTSSVSQHGVAEAIYDF 262
>UniRef50_Q8GXX9 Cluster: Putative uncharacterized protein
At5g38885/At5g38890; n=1; Arabidopsis thaliana|Rep:
Putative uncharacterized protein At5g38885/At5g38890 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 86
Score = 31.9 bits (69), Expect = 2.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 136 TPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKL 252
TPG+VI +F G G Y D + AS+ G + V+ L
Sbjct: 7 TPGDVIGKATEFKAGKGAYVNDATIYASLTGTCRIVSPL 45
>UniRef50_A2RVT9 Cluster: At5g38890; n=6; Magnoliophyta|Rep:
At5g38890 - Arabidopsis thaliana (Mouse-ear cress)
Length = 191
Score = 31.9 bits (69), Expect = 2.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 136 TPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKL 252
TPG+VI +F G G Y D + AS+ G + V+ L
Sbjct: 7 TPGDVIGKATEFKAGKGAYVNDATIYASLTGTCRIVSPL 45
>UniRef50_Q4QFY3 Cluster: Exosome complex exonuclease, putative;
ribosomal RNA processing protein 4, putative; n=7;
Trypanosomatidae|Rep: Exosome complex exonuclease,
putative; ribosomal RNA processing protein 4, putative -
Leishmania major
Length = 307
Score = 31.9 bits (69), Expect = 2.9
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEV 326
++ L RY EIGDVVVGR++EV
Sbjct: 71 VKGLLPRYQPEIGDVVVGRIVEV 93
>UniRef50_O30033 Cluster: Putative uncharacterized protein; n=1;
Archaeoglobus fulgidus|Rep: Putative uncharacterized
protein - Archaeoglobus fulgidus
Length = 179
Score = 31.9 bits (69), Expect = 2.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 127 RFYTPGEVITGIQDFMRGHGTYAEDDCLKASVAG 228
RF PG+ I +++++G G Y E L A+VAG
Sbjct: 2 RFVMPGDRIGSAEEYVKGEGVYEEGGELFAAVAG 35
>UniRef50_A2DET3 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 839
Score = 31.5 bits (68), Expect = 3.9
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = -3
Query: 237 LHNPSNRCF*AIIFCVSSVASHKILYPSYDFARSVKTRRVII*GNRMIYSFRC 79
L+N SN F +II V S++ +KI++P YD+ S+ T V + + ++ C
Sbjct: 563 LYNYSNYMF-SIIATVFSMSPNKIIFPKYDWICSMITHLVQLTSDSSSFALYC 614
>UniRef50_A5UMY4 Cluster: Predicted RNA-binding protein; n=1;
Methanobrevibacter smithii ATCC 35061|Rep: Predicted
RNA-binding protein - Methanobrevibacter smithii (strain
PS / ATCC 35061 / DSM 861)
Length = 190
Score = 31.5 bits (68), Expect = 3.9
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 130 FYTPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKL 252
F PG+ + I+ ++ G GTY ++ +K+SV G +Q +K+
Sbjct: 8 FVMPGDKLGIIEQYLLGKGTYEDNGEIKSSVLGNVQIDSKM 48
>UniRef50_UPI00015BB1CE Cluster: RNA-binding protein (consists of S1
domain and a Zn-ribbon domain)-like protein; n=1;
Ignicoccus hospitalis KIN4/I|Rep: RNA-binding protein
(consists of S1 domain and a Zn-ribbon domain)-like
protein - Ignicoccus hospitalis KIN4/I
Length = 192
Score = 31.1 bits (67), Expect = 5.1
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 139 PGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQ 237
PG+ + I+++ G GTY +D ++AS+ G ++
Sbjct: 12 PGDPLCVIEEYAPGPGTYEDDGIVRASIPGTVR 44
>UniRef50_A7FCW4 Cluster: Transporter, divalent anion:Na+ symporter
(DASS) family; n=7; Yersinia|Rep: Transporter, divalent
anion:Na+ symporter (DASS) family - Yersinia
pseudotuberculosis IP 31758
Length = 475
Score = 30.7 bits (66), Expect = 6.7
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -1
Query: 305 YHIAYFSNVTTLQWANAISLFTFCITPATDAFRQSSSA*VPWPLIKSCIPVMTS-PG-V* 132
+H+ F TTL+ + F I+P T + + S + +P+I S + + S PG
Sbjct: 106 FHMIRFCGSTTLRLGYVTAFLEFVISPVTPS-NTARSGGIVFPIILSVVKALGSEPGDTA 164
Query: 131 KRGGSLFEATE*FTLSDASFI 69
K+ GS + F + +SF+
Sbjct: 165 KKAGSYLMSNIYFVMKVSSFM 185
>UniRef50_Q9Y3B2 Cluster: 3'-5' exoribonuclease CSL4 homolog; n=26;
Eumetazoa|Rep: 3'-5' exoribonuclease CSL4 homolog - Homo
sapiens (Human)
Length = 195
Score = 30.7 bits (66), Expect = 6.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 121 PPRFYTPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQK 240
P R+ PGE + +++ G GTY + +S+AG + K
Sbjct: 4 PVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMK 43
>UniRef50_Q4XKB2 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 216
Score = 30.3 bits (65), Expect = 8.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 252 KFIYFLHNPSNRCF*AIIFCVSSVASHKILYPSYDFARSVKTRRVI 115
K I+F+HN C+ I C HK+ Y +YD + V V+
Sbjct: 147 KIIFFVHNEKQMCY--IDCCYILYYMHKLNYINYDIIKLVMKNSVL 190
>UniRef50_A5E3Q2 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 790
Score = 30.3 bits (65), Expect = 8.9
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Frame = +1
Query: 1 VVHNSQLAKRELKKTLEMVSHVSIKLASE-RVNHSVASNNDPPRFYTPGEVITGIQDFMR 177
+V + Q + + + L + H+ K + N A N P TP EVI + F++
Sbjct: 391 IVADKQQSNQLARVVLRRLEHIYYKPNQLIKANEEEAWKNIKPSTQTPSEVIESLTQFLQ 450
Query: 178 GHGTYAEDDCLKA----SVAGVMQKVNKLIAFAH 267
+ +A+ L + +V G K +L AH
Sbjct: 451 SNKVFAKQALLYSIYYYAVNGDYNKAKELFLSAH 484
>UniRef50_O29758 Cluster: Probable exosome complex RNA-binding
protein 1; n=1; Archaeoglobus fulgidus|Rep: Probable
exosome complex RNA-binding protein 1 - Archaeoglobus
fulgidus
Length = 223
Score = 30.3 bits (65), Expect = 8.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 264 PLKSRYVGEIGDVVVGRVLEV 326
PLK RY +GDVV+G + EV
Sbjct: 48 PLKGRYTPSVGDVVIGIIREV 68
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 301,208,919
Number of Sequences: 1657284
Number of extensions: 5060472
Number of successful extensions: 11666
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 11484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11662
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 10394654088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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