Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10699X
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c... 56 1e-09
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 28 0.43
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 25 2.3
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 2.3
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 25 3.0
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 25 4.0
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 24 5.3
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 24 7.0
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 23 9.2
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 23 9.2
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 23 9.2
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 23 9.2
>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 56.0 bits (129), Expect = 1e-09
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +1
Query: 136 TPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLIA 258
TPG+++T FMRGHGTY ED + ASVAG +Q+VNKLI+
Sbjct: 59 TPGQLVTDDPQFMRGHGTYFEDGGIYASVAGSVQRVNKLIS 99
Score = 38.3 bits (85), Expect = 3e-04
Identities = 13/24 (54%), Positives = 22/24 (91%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEVQ 329
++PL+S+YV EIGD+++G++ EVQ
Sbjct: 100 VKPLRSKYVPEIGDLIIGKIAEVQ 123
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 27.9 bits (59), Expect = 0.43
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 31 ELKKTLEMVS-HVSIKL-ASERVNHSVASNNDPPRFYTPGEVI 153
E KTL ++ V+ KL +SE +N S D P FY P E+I
Sbjct: 1238 EFNKTLSTINLEVANKLTSSEYINDSEMQLIDDPVFYPPYEII 1280
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 2.3
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +1
Query: 22 AKRELKKTLEMVSHVSIKLASER-----VNHSVASNNDPPRFYTPGEVITGIQDFMR 177
A ++L ++ VS + L S++ ++H + S +PP + P + + I+ F+R
Sbjct: 198 AFQQLSESFSNVSRMIPLLKSQKARIIGLSHGILSAYEPPNYAVPSILSSSIETFLR 254
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 2.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 1 VVHNSQLAKRELKKTLEMVSHVSIKLASERVNHSVASNNDP 123
++H++ L +R+ +LE VS + A V SNN P
Sbjct: 143 LIHSTLLEERDTPSSLEHVSFYLQESAVSEVRFDKPSNNGP 183
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 3.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 329 LNFQYSSDYHIAYFSNVTTLQWANAI 252
LNF+Y SD AY+ + +WA+ +
Sbjct: 286 LNFEYDSDLDYAYWGGPAS-EWASTL 310
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 24.6 bits (51), Expect = 4.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 238 FA*PQQQMLLGNHLLR 191
FA PQ+Q+ LG H++R
Sbjct: 1026 FAFPQEQLTLGKHVVR 1041
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 24.2 bits (50), Expect = 5.3
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 10 NSQLAKRELKKTLEMVSHVSIKLASERVNHSVASNNDPPRFYTPGEVITGIQDFMRGHGT 189
N+ +++ + +KTL S S ++S N S AS P P D ++GH T
Sbjct: 91 NNIVSEAKKQKTLGSSSSSSDAVSSN--NDSGASTPIPLPIKEPPLESNARNDKLKGHAT 148
Query: 190 YAE 198
+AE
Sbjct: 149 FAE 151
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 23.8 bits (49), Expect = 7.0
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 67 SIKLASERVNHSVASNNDPPRFYTPGEVITGIQDFMRGHGT 189
S+K R +HS+ SNND F T DF G T
Sbjct: 1793 SLKEVLLRGSHSLHSNNDRTSFDIEAGFGTAESDFQFGGAT 1833
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 23.4 bits (48), Expect = 9.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 142 GEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLIAFAH*RVV 279
G+ +T + +F GTY+ DD LK +V + K I H +V+
Sbjct: 36 GKTLTSVLNFDIP-GTYSSDDVLKLTVERSISKNWTDIVLLHLQVL 80
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 215 AFRQSSSA*VPWPLIKSCIP 156
A R++SS + WPL++ +P
Sbjct: 662 AMRKASSTAIKWPLVRFKLP 681
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 23.4 bits (48), Expect = 9.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 127 RFYTPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLIAFAH 267
+F++P +I G G G +CLK + G++ K AF H
Sbjct: 24 QFFSPLTLIVG----QNGSGKTTIIECLKYATTGILPPNTKGGAFIH 66
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 55 VSHVSIKLASERVNHSVASNNDPPRFYT 138
+ +++KL S VN + ASN P + ++
Sbjct: 243 IQQMNVKLPSSLVNRNEASNTGPMKKFS 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,285,985
Number of Sequences: 5004
Number of extensions: 22688
Number of successful extensions: 52
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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