Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10699X
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996...    35   0.014
02_05_1212 - 34960977-34961097,34961283-34961371,34962165-349622...    32   0.13 
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    29   0.91 
11_01_0802 - 7115854-7116778,7117087-7117211,7118947-7119426,712...    26   6.4  
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287...    26   6.4  
01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803     26   6.4  
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845     26   8.5  
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683...    26   8.5  

>04_04_0529 -
           25997736-25998055,25998441-25998804,25999563-25999675,
           25999880-25999989,26000155-26000311,26000390-26000915,
           26001101-26001265,26002470-26002589,26003022-26003093,
           26003422-26003499,26003965-26004057,26004491-26004647,
           26005351-26005589,26006907-26007050,26007637-26007666,
           26010610-26010993,26011486-26011554,26012353-26012418,
           26013166-26013255,26013583-26013628,26014318-26014419,
           26014552-26014694
          Length = 1195

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 12/23 (52%), Positives = 20/23 (86%)
 Frame = +3

Query: 258 IRPLKSRYVGEIGDVVVGRVLEV 326
           +R L++RY  E+GD++VGRV+E+
Sbjct: 76  VRTLRARYKPEVGDIIVGRVIEI 98



 Score = 32.7 bits (71), Expect = 0.074
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +1

Query: 166 DFMRGHGTYAEDDCLKASVAGVMQKVNKLI 255
           + ++GHGT  +D  + A++ GV+++VNKL+
Sbjct: 45  NILKGHGTSDQDGEVVATLCGVVERVNKLV 74


>02_05_1212 -
           34960977-34961097,34961283-34961371,34962165-34962239,
           34962330-34962488
          Length = 147

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 112 NNDPPRFYTPGEVITGIQDFMRGHGTYAEDDCLKASVAG 228
           ++D     TPGE++ G    + G G YA+  C++AS+ G
Sbjct: 2   DHDGGEVVTPGELL-GNSSLLAGLGAYADGRCVRASITG 39


>02_01_0689 +
           5137506-5137591,5138641-5138709,5139489-5139580,
           5139967-5140289,5141373-5142479,5142593-5143279,
           5144214-5144522,5145488-5145823,5146165-5146263,
           5146676-5146940,5146950-5147104,5147666-5149723,
           5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 49  EMVSHVSIKLASERVNHSVA-SNNDPPRFYTPGEVITGIQDFMRGHG 186
           E VS +++   S RV H    SN D   +   G V+TG+QD  +  G
Sbjct: 487 EFVSSLTVASGSLRVVHKNGQSNGDVMSYGRHGSVVTGLQDHTQPSG 533


>11_01_0802 -
           7115854-7116778,7117087-7117211,7118947-7119426,
           7120005-7120222,7120351-7120441
          Length = 612

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 269 EESLRWRNRRCGSRKSIG 322
           E S+ WR R CGSRK  G
Sbjct: 5   EVSVDWRGRPCGSRKHGG 22


>02_01_0395 +
           2869748-2870045,2870450-2870571,2871700-2871777,
           2871886-2872470,2872917-2873657,2873794-2873868
          Length = 632

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 321 PILFRLPHRLFLQRNDSSMGECNKFIYFL 235
           PIL RLP + +  RNDS  G  ++  Y L
Sbjct: 249 PILRRLPPKFYSPRNDSKHGCASEKAYNL 277


>01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803
          Length = 298

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 320 QYSSDYHIAYFSNVTTLQWANAISLFTFCITPATDAFRQSSSA*VPWPLI 171
           QYS+    A  +  TT  W++  S  T   T ++     SSS+ +PWP +
Sbjct: 195 QYSTITAAAVDAATTTTSWSSP-STGTTSPTASSSTDGSSSSSNLPWPAV 243


>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
          Length = 170

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 240 SK*TYCIRPLKSRYVGEIGDVVVGRVLEVQ 329
           +K   CI+ L+ +    +GD ++G V E Q
Sbjct: 66  AKRVMCIQSLRGKKGARLGDTIIGSVKEAQ 95


>04_01_0519 +
           6831912-6831978,6832333-6832488,6832748-6833098,
           6833481-6833662,6833756-6834004,6834182-6834406,
           6837492-6837791,6838642-6839215,6839959-6840059
          Length = 734

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 249 TYCIRPLKSRYVGEIGDVVVGRVLEVQQ 332
           T C+RP++  +V  + D   G  L++Q+
Sbjct: 653 TMCLRPMEDSFVLPLSDDACGEFLQLQE 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,044,426
Number of Sequences: 37544
Number of extensions: 138724
Number of successful extensions: 291
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)