BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV10699X (332 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_13063| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.18 SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43) 27 5.0 SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6 SB_10833| Best HMM Match : RNase_PH_C (HMM E-Value=0.26) 26 8.8 >SB_13063| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 238 Score = 31.5 bits (68), Expect = 0.18 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = +3 Query: 276 RYVGEIGDVVVGRVLEVQ 329 RY GEIGDVVVGR+ E + Sbjct: 40 RYNGEIGDVVVGRITEAE 57 Score = 27.9 bits (59), Expect = 2.2 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +1 Query: 64 VSIKLASERVNHSVASNNDPPRFYTPGEVITGIQDFMRGHG 186 V +L +R + + S ++P TPG+VIT +MR +G Sbjct: 3 VDARLPCKRKSVASISVSEPKHIVTPGDVITEDTGYMRYNG 43 >SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43) Length = 453 Score = 26.6 bits (56), Expect = 5.0 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = -3 Query: 291 FLQRNDSSMGECNKFIYFLHNPSNRCF*AIIFC 193 FL +++S+M N FIYF++N S R +FC Sbjct: 286 FLVQSNSAM---NFFIYFIYNESYRSIIRELFC 315 >SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 576 Score = 26.2 bits (55), Expect = 6.6 Identities = 14/48 (29%), Positives = 18/48 (37%) Frame = -1 Query: 284 NVTTLQWANAISLFTFCITPATDAFRQSSSA*VPWPLIKSCIPVMTSP 141 N T L W + C P + +PWPLI+ I T P Sbjct: 469 NATALPWLLIEGVIVQCTLPLPPIQSVITRRALPWPLIQGVIVQCTLP 516 >SB_10833| Best HMM Match : RNase_PH_C (HMM E-Value=0.26) Length = 184 Score = 25.8 bits (54), Expect = 8.8 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +3 Query: 264 PLKSRYVGEIGDVVVGRVLEVQQ 332 PL + E DV GRVLEVQQ Sbjct: 150 PLTQDKLQECFDVTTGRVLEVQQ 172 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,459,108 Number of Sequences: 59808 Number of extensions: 164108 Number of successful extensions: 345 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 328 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 345 length of database: 16,821,457 effective HSP length: 72 effective length of database: 12,515,281 effective search space used: 475580678 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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