Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10699X
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-30|AAK68595.1|  303|Caenorhabditis elegans Exosome (mul...    44   3e-05
Z81457-8|CAE17712.1|   79|Caenorhabditis elegans Hypothetical pr...    27   3.3  
U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical p...    26   7.5  
Z81457-10|CAB03813.2|   79|Caenorhabditis elegans Hypothetical p...    25   10.0 
Z81457-4|CAB03816.1|   79|Caenorhabditis elegans Hypothetical pr...    25   10.0 
U80029-9|AAB37588.1|  459|Caenorhabditis elegans Hypothetical pr...    25   10.0 
U00050-12|AAA50700.2|   86|Caenorhabditis elegans Nematode speci...    25   10.0 

>AC084197-30|AAK68595.1|  303|Caenorhabditis elegans Exosome
           (multiexonuclease complex)component protein 2 protein.
          Length = 303

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
 Frame = +1

Query: 100 SVASNN-DPPRFYTPGE-VITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLI 255
           S A N+ D  +   PG  V    Q FMRGHGTY  D  + +S++GV+Q++N+L+
Sbjct: 20  SEARNDIDETKIVIPGHSVCDAPQQFMRGHGTYVRDGEIVSSLSGVVQQLNRLL 73



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +3

Query: 258 IRPLKSRYVGEIGDVVVGRVLEVQ 329
           ++ +K RY GE+GDVVV RV+EVQ
Sbjct: 75  VKTIKQRYAGEVGDVVVARVVEVQ 98


>Z81457-8|CAE17712.1|   79|Caenorhabditis elegans Hypothetical
           protein C01G12.11 protein.
          Length = 79

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 219 RCF*AIIFCVSSVASH-KILYPSYDFA 142
           +CF A++FC   + SH +++ P+Y  A
Sbjct: 4   KCFAAVLFCAMIMGSHQQVVVPAYSAA 30


>U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical
           protein T28A11.17 protein.
          Length = 493

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -1

Query: 59  LTISNVFLSSLFANCEL 9
           LT++NVF +SL+AN E+
Sbjct: 130 LTLTNVFYNSLYANIEV 146


>Z81457-10|CAB03813.2|   79|Caenorhabditis elegans Hypothetical
           protein C01G12.2 protein.
          Length = 79

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 219 RCF*AIIFCVSSVASH-KILYPSYDFA 142
           +CF A++ C + + SH +++ P+Y  A
Sbjct: 4   KCFAAVLLCATIMGSHQQVVVPAYSAA 30


>Z81457-4|CAB03816.1|   79|Caenorhabditis elegans Hypothetical
           protein C01G12.6 protein.
          Length = 79

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 219 RCF*AIIFCVSSVASH-KILYPSYDFA 142
           +CF A++ C + + SH +++ P+Y  A
Sbjct: 4   KCFAAVLLCATIMGSHQQVVVPAYSAA 30


>U80029-9|AAB37588.1|  459|Caenorhabditis elegans Hypothetical
           protein T20D4.9 protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 59  LTISNVFLSSLFANCEL 9
           LT++N+F +SL+AN E+
Sbjct: 106 LTLTNIFYNSLYANIEV 122


>U00050-12|AAA50700.2|   86|Caenorhabditis elegans Nematode specific
           peptide family,group b protein 12 protein.
          Length = 86

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 219 RCF*AIIFCVSSVASH-KILYPSYDFA 142
           +CF A++ C   V SH + + PSY  A
Sbjct: 4   KCFVAVLLCAMIVGSHQQYVVPSYSAA 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,069,981
Number of Sequences: 27780
Number of extensions: 127312
Number of successful extensions: 311
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)