Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10699X
         (332 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.0  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    20   9.1  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           20   9.1  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           20   9.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 185  PWPLIKSCIPVMTSPGV*KRG 123
            P  +++S  P+MT P   KRG
Sbjct: 975  PGGVVQSQQPIMTDPSPFKRG 995


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +1

Query: 160 IQDFMRGHGTYAEDDCLKASVAGVMQKVNKLI 255
           +Q   +  GTY +  CL   +     K N  I
Sbjct: 7   LQSLKKDFGTYFQQYCLHHKILIKKNKCNAFI 38


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 211 KASVAGVMQKVNKLIAFAH 267
           +A  AGV+  +N +I F H
Sbjct: 83  QAHCAGVITALNNVIDFLH 101


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 211 KASVAGVMQKVNKLIAFAH 267
           +A  AGV+  +N +I F H
Sbjct: 83  QAHCAGVITALNNVIDFLH 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,551
Number of Sequences: 438
Number of extensions: 1358
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)