Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10699X
(332 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g03360.1 68414.m00315 exonuclease family protein similar to ... 42 8e-05
At5g38890.1 68418.m04703 exoribonuclease-related similar to SP|P... 32 0.11
At1g01990.1 68414.m00117 expressed protein 29 1.0
At2g36680.1 68415.m04499 expressed protein 28 1.4
At1g62600.1 68414.m07062 flavin-containing monooxygenase family ... 28 1.4
At3g53120.1 68416.m05854 expressed protein 28 1.8
At2g32750.1 68415.m04007 exostosin family protein contains Pfam ... 27 4.1
At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase, p... 26 7.2
At3g32030.1 68416.m04070 terpene synthase/cyclase family protein... 26 7.2
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si... 26 7.2
At5g59420.1 68418.m07446 oxysterol-binding family protein simila... 25 9.5
At2g38700.1 68415.m04753 mevalonate diphosphate decarboxylase (M... 25 9.5
>At1g03360.1 68414.m00315 exonuclease family protein similar to
Exosome complex exonuclease RRP4 (Ribosomal RNA
processing protein 4)(SP:P38792) {Saccharomyces
cerevisiae}
Length = 322
Score = 42.3 bits (95), Expect = 8e-05
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 LAKRELKKTLEMVSHVSIKLASERVNH-SVASNNDPPRFYTPGEVITGIQDFMRGHGTYA 195
+ R+L+ L V + A ER+ S ++N+D T + F++GHGT
Sbjct: 1 MVMRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSE 60
Query: 196 EDDCLKASVAGVMQKVNKLI 255
D L A+V GV+++V+KL+
Sbjct: 61 VDGELLATVCGVVERVDKLV 80
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 258 IRPLKSRYVGEIGDVVVGRVLEVQQ 332
+R L++RY E+GD+VVGRV+EV Q
Sbjct: 82 VRTLRARYKPEVGDIVVGRVIEVAQ 106
>At5g38890.1 68418.m04703 exoribonuclease-related similar to
SP|P53859 3'-5' exoribonuclease CSL4 (EC 3.1.13.-)
{Saccharomyces cerevisiae}
Length = 191
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 136 TPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKL 252
TPG+VI +F G G Y D + AS+ G + V+ L
Sbjct: 7 TPGDVIGKATEFKAGKGAYVNDATIYASLTGTCRIVSPL 45
>At1g01990.1 68414.m00117 expressed protein
Length = 245
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 118 DPPRFYTPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLIA 258
DP R +V+ + + +R Y D C K +V G ++ N+L+A
Sbjct: 170 DPGRVMEYSQVVDELMEILRDMEVYI-DKCQKDNVKGYLRSCNRLLA 215
>At2g36680.1 68415.m04499 expressed protein
Length = 218
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 31 ELKKTLEMVSHVSIKLASERVNHSVASNNDPPRFYTPGEVITGIQDFM 174
EL+ ++ + A E++N + +FY+PG ++ +QD M
Sbjct: 120 ELRNQCRIIRTSELATAQEKLNELENQREEILKFYSPGSLLHRLQDAM 167
>At1g62600.1 68414.m07062 flavin-containing monooxygenase family
protein / FMO family protein low similarity to
flavin-containing monooxygenase 2 from Cavia porcellus
[SP|P36366]; contains Pfam profile PF00743
Flavin-binding monooxygenase-like
Length = 452
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 91 VNHSVASNNDPPRFYTPGEVITGIQDFMR 177
+ V+ + DP RF + GEV+ +QDF +
Sbjct: 95 IRSDVSESRDPRRFPSHGEVLAYLQDFAK 123
>At3g53120.1 68416.m05854 expressed protein
Length = 217
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +1
Query: 31 ELKKTLEMVSHVSIKLASERVNHSVASNNDPPRFYTPGEVITGIQDFM 174
EL+ ++ + A E++N + +FY+PG ++ +Q+ M
Sbjct: 120 ELRNQCRIIRTTELATAQEKLNELERQKEEILKFYSPGSLLHKLQEAM 167
>At2g32750.1 68415.m04007 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 509
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 239 FCITPATDAFRQSSSA*VPWPLIKSCIPVMTSPG 138
FC+ P+ D++ + S + ++ CIPV SPG
Sbjct: 358 FCLQPSGDSYTRRS---IFDSILAGCIPVFFSPG 388
>At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase,
putative similar to mevalonate diphosphate decarboxylase
[Arabidopsis thaliana] gi|2288887|emb|CAA74700
Length = 419
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Frame = +1
Query: 1 VVHNSQLAKRELKKTLEMVSHVSIKLASERVNHSVASNNDPPRFY---TPGEVITGIQDF 171
VV L E K + S + H+V + PP FY T +I+ ++ +
Sbjct: 237 VVPKRILQMEEAIKNRDFASFTQLTCTDSNQFHAVCLDTSPPIFYMNDTSHRIISLVEKW 296
Query: 172 MRGHGT 189
R GT
Sbjct: 297 NRSEGT 302
>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
contains Pfam profile: PF01397 terpene synthase family
Length = 604
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 88 RVNHSVASNNDPPRFYTPGEVITGIQDFMRGHGTYAED 201
R+N+ + + R + GEV+ G+ +M HG E+
Sbjct: 497 RINNDIVTYE---REMSKGEVVNGVNSYMNQHGVTKEE 531
>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
similar to GB:Z98756 from (Mycobacterium leprae)
Length = 196
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 222 CWGYAKSK*TYCIRPLKSRYVGEIGDVVVGRVLE 323
C + +K CI+ L+ + +GD++VG V E
Sbjct: 57 CVDNSCAKEVMCIQSLRGKKGARLGDIIVGSVKE 90
>At5g59420.1 68418.m07446 oxysterol-binding family protein similar
to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
cuniculus}; contains Pfam profile PF01237:
Oxysterol-binding protein
Length = 457
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 34 LKKTLEMVSHVSIKLASERVNH 99
L +T EMV+H I SE+V+H
Sbjct: 149 LGETYEMVNHGGISFISEQVSH 170
>At2g38700.1 68415.m04753 mevalonate diphosphate decarboxylase
(MVD1) identical to mevalonate diphosphate decarboxylase
[Arabidopsis thaliana] gi|2288887|emb|CAA74700
Length = 412
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Frame = +1
Query: 19 LAKRELKKTLEMVSHVSIKLASERVNHSVASNNDPPRFY---TPGEVITGIQDFMRGHGT 189
L E K + S + + H+V + PP FY T +I+ ++ + R GT
Sbjct: 243 LQMEEAIKNRDFTSFTKLTCSDSNQFHAVCMDTSPPIFYMNDTSHRIISLVEKWNRSAGT 302
Query: 190 YAEDDCLKASVAGVMQKVNKLIA 258
A VM N+ +A
Sbjct: 303 PEIAYTFDAGPNAVMIARNRKVA 325
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,638,256
Number of Sequences: 28952
Number of extensions: 116494
Number of successful extensions: 256
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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