Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10697X
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 27 1.0
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 27 1.0
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 1.0
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 1.0
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 27 1.3
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 26 3.1
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 25 4.1
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|... 25 5.4
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 25 5.4
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||... 25 5.4
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 25 7.1
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.1
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 25 7.1
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 24 9.4
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 27.5 bits (58), Expect = 1.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 288 WDAD-NFEPKLPTTLAASNKWEGEDEDDNVKES----WEDEEVA 404
W++ F K P TLA +N WE +D+ K S W + E+A
Sbjct: 230 WNSTLEFIEKYPETLAKNNLWEWISDDNGKKFSHCHFWSNFEIA 273
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.5 bits (58), Expect = 1.0
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +3
Query: 258 DSGVLKMDVSWDADNFEPKLPTTLAASNKWEGEDEDDNVKESWEDEEVAKNRRR 419
+ G+L++ EP+ +AS + E E+E++ +E+ D+E +N+R+
Sbjct: 284 EQGMLELSQDTRESTAEPRAAGEESASEEEE-EEEEEEEEENEADDETRENKRQ 336
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.5 bits (58), Expect = 1.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 336 SNKWEGEDEDDNVKESWEDEEVAKNRRRKD 425
S W D DDN++ S DEE K RK+
Sbjct: 540 SGGWIDVDSDDNIELSDSDEEEEKATARKE 569
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 1.0
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 279 DVSWDADNFEPKLPTTLAASNKWEGEDEDDNVKESWEDEEVAKNRRRK 422
D D DN E A +N+ E EDE+D+ +E EDE+ + RRK
Sbjct: 92 DKKEDEDNVEENEEE--ADANEEEEEDEEDD-EEDEEDEDESGGGRRK 136
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 27.1 bits (57), Expect = 1.3
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 132 YT*VLLLSRKRRLWRHLVSDKSLSIVVRFWCS-GEKFSY*FGAD 260
Y V L+ R HL SD+S IVV W G K Y G++
Sbjct: 203 YEDVYLVERATGRIEHLASDQSKKIVVAEWSPIGHKLVYGLGSN 246
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.8 bits (54), Expect = 3.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 171 WRHLVSDKSLSIVVRFWCSGEKF 239
WR ++ + ++++R W SGEKF
Sbjct: 576 WR--INQRLFNVLIRIWNSGEKF 596
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 354 EDEDDNVKESWEDEEVAKNRRRKD*GSD 437
EDE++ + + E++++ K R+ D GSD
Sbjct: 101 EDEEEILAKKREEQKLRKRSRQNDDGSD 128
>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 187
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 398 LLILPAFLYVIILVFPFPF 342
LL+LP F ++++LV+P F
Sbjct: 97 LLLLPPFSHLLVLVYPSVF 115
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.0 bits (52), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 300 NFEPKLPTTLAASNKWEGEDEDDNVKESWEDEEVAKNRRRKD*GSDTS 443
+++ L TL A + D DD+V S ++ EV+ RR+ + S S
Sbjct: 103 DYQELLRQTLEADE--DASDSDDSVDSSNKNSEVSIKRRKTESNSQES 148
>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 186
Score = 25.0 bits (52), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 351 GEDEDDNVKESWEDEEVAKNRRRK 422
GED D+ E E+EEV N +++
Sbjct: 163 GEDASDSEPELEEEEEVGSNEKKE 186
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 24.6 bits (51), Expect = 7.1
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Frame = +3
Query: 225 SGEKFSY*FGADSGVLKMD-VSW---DADNFEPKLPTTLAASNKWEGEDEDD-----NVK 377
S K S G+ G K++ VS+ D N P P L + + E D NV+
Sbjct: 414 SSSKKSANTGSGQGKTKVEYVSYNSVDKGNSSPFKPLELNVVGEKKANAEVDSLPSENVQ 473
Query: 378 ESWEDEEVAKNRRRKD*GS 434
ES +D+ +NRR ++ GS
Sbjct: 474 ESEDDKAFEENRRLRNLGS 492
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 163 RFLDNNKTQV*FFKLKTIFCNYHGRIEKQ 77
R+LD+N +V F L FC + +++Q
Sbjct: 1506 RWLDDNAAEVNQFMLSCFFCRWEDFLKQQ 1534
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -1
Query: 216 IGQLSTVTYHSQDVSRVVVF*TTTKLKCNSSN*RRFSAIITVGL 85
+G++ + D++++ F T KL C S R+S+ + GL
Sbjct: 417 LGKIRKSSIAKTDITKIFDFETEQKLSCLSCKRVRYSSFSSQGL 460
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 348 EGEDEDDNVKESWEDEEVAKNRRRKD*GSDT 440
EGE DDN +S+ E+AK + G+ T
Sbjct: 171 EGELHDDNETDSFRINELAKQIQETSLGATT 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,818
Number of Sequences: 5004
Number of extensions: 38945
Number of successful extensions: 156
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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