Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10695
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    25   8.2  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   8.2  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   8.2  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   8.2  

>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 358 FENVSKYTW*V-LH*YVQSIFVLKNNKLFYYNYFQRYINEKHKK 486
           F  V+K  W + L  +++  +    ++LF+Y  F R+I++ H +
Sbjct: 129 FPPVTKMIWQITLFFFLEDTWHYWAHRLFHYGIFYRFIHKVHHR 172


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 382 KCILKRSRKGR*ENTSYRSRGEKTL 308
           KC L  SRKGR  + ++  RG +TL
Sbjct: 6   KCYLPNSRKGR--DVNFHDRGPETL 28


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 563 YLVRFSFVSNVYDDRVKELFFINRRSDRQIVTWILSKFQSHCYMPI 700
           +L   S  S++Y+D     + + R S + +++ ILS+ +   Y+PI
Sbjct: 331 FLEEMSDYSSIYEDEEDVSWIVRRESLKVVLSVILSRLE---YLPI 373


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +2

Query: 635  RSDRQIVTWILSKFQS 682
            +S++Q+ TW++ KF+S
Sbjct: 977  KSEKQLPTWVIDKFES 992


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,333
Number of Sequences: 5004
Number of extensions: 53999
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)