Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10695
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    34   0.12 
U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine rece...    33   0.20 
U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical p...    31   1.1  
AF125954-6|AAD14707.2|  346|Caenorhabditis elegans Serpentine re...    30   1.9  
AC006769-7|AAF60589.1|  346|Caenorhabditis elegans Serpentine re...    30   1.9  
Z81124-7|CAB03376.1|  334|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U00056-2|AAN65309.2|  187|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine re...    28   7.7  

>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +1

Query: 436 LFYYNYFQ-RYINEK--HKKKNLILVLISTSVFFFYLLYVYTIQILFSTILFC 585
           LF +NY Q +++  K  H   N++LV  S S FF YL++    + + ST + C
Sbjct: 268 LFSHNYVQFQFVIFKIIHHISNVLLVFYSASTFFIYLIFSEKYRNVLSTCVTC 320


>U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein3 protein.
          Length = 349

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +2

Query: 215 FVTLYRIYYYFATTTVVVMQLGNVINKNKKKQGFFTS*SIGRVFLSSFSRTFQNTLGKFY 394
           F + +  ++YF T T +VM L   +    +K   FT+ +   +FL     +F       Y
Sbjct: 88  FGSAFLFFWYFETFTQIVMALNRYLVICLQKHHIFTTTTTILIFLFLIPFSFGLMYNSQY 147

Query: 395 ISTCSLFLF 421
           ++ C  FLF
Sbjct: 148 VNPCCSFLF 156


>U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical
           protein K06C4.9 protein.
          Length = 492

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
 Frame = +1

Query: 100 QVDTFSTCPLYMMVLLSSTTHIQSKNLK*INKFSGA--------IRIRHFISNILLFCY 252
           Q +  +T  L +MV+L +T H  +  LK IN  S          IR+ H ISN+LL  Y
Sbjct: 368 QKEKRTTTMLLVMVILYATCHFFNTTLKFINMVSKTYAQFRFPVIRVIHHISNLLLVIY 426



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 478 HKKKNLILVLISTSVFFFYLLYVYTIQILFSTILFC 585
           H   NL+LV+ S S  F YL++    + + ST + C
Sbjct: 416 HHISNLLLVIYSASTVFIYLIFSTKYRKVLSTCVTC 451


>AF125954-6|AAD14707.2|  346|Caenorhabditis elegans Serpentine
           receptor, class t protein1 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 463 YINEKHKKKNLILVLISTSVFFFYLLYVYTIQILFSTILFCVK 591
           Y+N  H   N I V IST+  +FYL Y    +  +ST ++  K
Sbjct: 196 YVNVLHNINNPI-VAISTTFLYFYLCYYLIFKYGYSTSMWLYK 237


>AC006769-7|AAF60589.1|  346|Caenorhabditis elegans Serpentine
           receptor, class t protein2 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 463 YINEKHKKKNLILVLISTSVFFFYLLYVYTIQILFSTILFCVK 591
           Y+N  H   N I V IST+  +FYL Y    +  +ST ++  K
Sbjct: 196 YVNVLHNINNPI-VAISTTFLYFYLCYYLIFKYGYSTSMWLYK 237


>Z81124-7|CAB03376.1|  334|Caenorhabditis elegans Hypothetical
           protein T21B4.9 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +1

Query: 97  LQVDTFSTCPLYMMVLLSSTTHIQSKNLK*INKFSGAIRIRHFISNILL 243
           LQV  FS+C +Y + +  +T  +Q++  + I  F G I I+ FI  +L+
Sbjct: 223 LQVIFFSSCCIYYLCISKTTISLQTRQYQ-IRSFIGLI-IQTFIPILLV 269


>U00056-2|AAN65309.2|  187|Caenorhabditis elegans Hypothetical
           protein R05H11.2 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 126 LIHDGTPFFYHSYSKQK 176
           ++HDG  +FYH Y ++K
Sbjct: 45  IVHDGDTYFYHPYRQRK 61


>AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine
           receptor, class h protein20 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 430 NKLFYYNYFQRYINEKHKKKNLILVLISTSVFFFYLLYVYTIQILFSTILF 582
           ++LFY+ Y      ++HK  + I VL+ T   F  L  ++++  +  T  F
Sbjct: 109 SELFYFRYKASVSYKEHKFTHFIQVLVYTIRTFALLSLIFSLATMHETSRF 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,652
Number of Sequences: 27780
Number of extensions: 296309
Number of successful extensions: 804
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)