Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10694
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   3.8  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   5.1  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    26   6.7  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    25   8.9  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 126 ANSTARVDNVSCYSC 82
           +NS  R+DNV+CY C
Sbjct: 57  SNSEERLDNVTCYMC 71


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 635 LHGLFYLVFH--YNYIKHNLFRCEDSKI 712
           LH  FYL+FH  +N +K +  R   S+I
Sbjct: 118 LHSSFYLLFHEPFNILKGSTLRFSQSRI 145


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 97  DIVHTRRAIRSVSGNVELKNSVDEDGYSADY 189
           D+V   RA  ++     L N +D+DG +A Y
Sbjct: 442 DVVELTRACEAMGAGEVLLNCMDQDGSNAGY 472


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 185 IMLPYSTSSCGSV*YXXXXXXXXXRPNGYGPRQGLHYLSYDQ 310
           + LP   SS   + +         +P  YG R+G+H +S DQ
Sbjct: 48  LSLPLLLSSGAHLGHSTSIWNPYTQPFIYGKREGIHIISLDQ 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,984
Number of Sequences: 5004
Number of extensions: 58630
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)