Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10694
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924...    31   0.75 
03_06_0692 + 35585445-35586008,35586222-35586560                       29   5.3  
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807...    28   7.0  
11_01_0377 + 2877530-2878577,2878721-2878803                           28   9.3  
03_06_0069 - 31449319-31450368                                         28   9.3  

>04_04_0350 +
           24591002-24591123,24592020-24592091,24592343-24592448,
           24593138-24593242,24593693-24593815,24594163-24594630,
           24595226-24595351,24595430-24595516,24595615-24595701,
           24595807-24595903,24596519-24596636,24596923-24596995,
           24597504-24597566,24597666-24597832,24598444-24598631,
           24598909-24599057,24599193-24599442,24599597-24599855,
           24599977-24600073,24606696-24606776,24606914-24606970,
           24607264-24607395,24607476-24607562,24607941-24608049,
           24608134-24608270,24608841-24608945,24609566-24609654,
           24609757-24609859,24609960-24610064,24610282-24610293,
           24611013-24611078
          Length = 1279

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 335 NSSASALAD*NLVQYLFLYKFYGCSFCQKTHSISIVTF*ICFSFYNKLAFPRSGPTKKIT 514
           N S S LA    ++Y+  Y+   C+     HS+ ++   IC +   K  +  SG  ++ T
Sbjct: 130 NDSTSMLAHHAFIEYIVNYEELCCNDVSHFHSVYVLVSCICLAVLIKAPWLGSGKVQQTT 189

Query: 515 D 517
           D
Sbjct: 190 D 190


>03_06_0692 + 35585445-35586008,35586222-35586560
          Length = 300

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 136 GNVELKNSVDEDGYSADYAAIFNIILWFGVVFTFTLIAI 252
           GN+E+ +  ++ G S D  AI +I+   G  F F +IAI
Sbjct: 114 GNLEMFDDSNDHGSSDDEGAIHDIVAIPGEGFQFNIIAI 152


>11_02_0078 -
           8074247-8074837,8075815-8076341,8076453-8077022,
           8077725-8077752
          Length = 571

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 99  HCPHAPCYSLGIWKCRTQ 152
           HCP APC S   W C  Q
Sbjct: 276 HCPDAPCCSANGWTCLHQ 293


>11_01_0377 + 2877530-2878577,2878721-2878803
          Length = 376

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 557 VITRSGSVALATVYDKLGRLTFGYCYLHGLFYLVFHYNYIKHNLFRCEDS 706
           V T  GS++ ATV   L  ++ G C++  L+ ++     + H+ F   D+
Sbjct: 243 VFTEMGSISTATVIIVLAEVSIGTCFISYLWSILLSVGLL-HDTFVSHDT 291


>03_06_0069 - 31449319-31450368
          Length = 349

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 621 NVSRPNLSYTVASATLPLLVITSARPSFMS 532
           N  RP   Y VA+A+LP     ++ PS +S
Sbjct: 270 NAGRPQAPYDVATASLPCTTAVTSLPSALS 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,324,324
Number of Sequences: 37544
Number of extensions: 346452
Number of successful extensions: 776
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)