Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10694
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39522| Best HMM Match : PAN (HMM E-Value=0.0005)                    30   1.8  
SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)                    28   7.2  
SB_4577| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  

>SB_39522| Best HMM Match : PAN (HMM E-Value=0.0005)
          Length = 297

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 740 PLKAVYSACLSYYLHTETNYVLYNYS 663
           PL+ V   C+++ LH E  Y+ Y+YS
Sbjct: 10  PLRKVNEDCVTFALHNEIRYLSYSYS 35


>SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)
          Length = 606

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 190 AAIFNIILWFGVVFTFTLIAIVTP*WIWTPA 282
           +AI+NI++  G + +F  +AIV P + W P+
Sbjct: 496 SAIYNIMICIGSILSFVTMAIVVP-FHWYPS 525


>SB_4577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 311 VGHTIDNGVPAGVHIH*GVTMAIKVKVNTTPNHR 210
           V HT   GV  G+H+   +T ++ +  N TP HR
Sbjct: 11  VCHTTPTGVLCGIHLR--ITPSLDILSNNTPIHR 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,165,915
Number of Sequences: 59808
Number of extensions: 429097
Number of successful extensions: 1074
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)