Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10694
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92837-2|CAB07401.1|  324|Caenorhabditis elegans Hypothetical pr...    39   0.004
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    29   3.6  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    29   4.7  
AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical...    28   8.3  

>Z92837-2|CAB07401.1|  324|Caenorhabditis elegans Hypothetical
           protein R03E1.2 protein.
          Length = 324

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +3

Query: 261 LMDMDPGRDSIIYRMTNTRMKKD 329
           +  +DP +DSIIYRMT TRMKKD
Sbjct: 302 MASIDPEKDSIIYRMTTTRMKKD 324


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 130 VSGNVELKNSVDEDGYSADYAAIFNIILWFGVVFTFTLIAIV 255
           + G++ L+ +    G++ ++  +FN   WF + F F  + IV
Sbjct: 182 IFGSILLRATGTIFGWTNNFLVMFNTFFWFSICFGFNSVLIV 223


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
            protein Y51H4A.12 protein.
          Length = 1677

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 88   VTTDIVHTRRAIRSVSGNVELKNSV 162
            VTTD+V  R+ I  V+G+V + N V
Sbjct: 985  VTTDLVQIRQVILEVNGHVSMSNEV 1009


>AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical
           protein Y39B6A.29 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 500 TKKITDFMISPDMKLGRAEVITRSGSVALATVYDKLGRLTFGYCYLHGLFYLV 658
           +++  DF + P M +G    I   G V ++T YD   R T     L G  YLV
Sbjct: 310 SRRFKDFSLQPTMLIGAIFSILGFGLVHVSTPYDAPMRPTQEVPLLFGHSYLV 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,457,047
Number of Sequences: 27780
Number of extensions: 328330
Number of successful extensions: 853
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)