Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10694
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52220.1 68414.m05892 expressed protein                             29   4.4  
At2g38230.1 68415.m04695 stress-responsive protein, putative sim...    28   5.9  

>At1g52220.1 68414.m05892 expressed protein
          Length = 156

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +2

Query: 542 LGRAEVITRSGSVALATVYDKLGRLTFGYCYLHGLFYLVFHYNYIKHNLFRCEDSKI 712
           LG A ++    S+ L T  DKL  ++ G+  +  LF   F Y Y+     R E SKI
Sbjct: 89  LGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKI 145


>At2g38230.1 68415.m04695 stress-responsive protein, putative
           similar to ethylene-inducible protein HEVER [Hevea
           brasiliensis] SWISS-PROT:Q39963; contains Pfam domain,
           PF01680: SOR/SNZ family
          Length = 309

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +1

Query: 85  AVTTDIVHTRRAIRSVSGNVELKNSVDED---GYSADYAAIFNIIL 213
           A T ++V   R +RSV+G + L  S+D+D    Y+   AA +++++
Sbjct: 169 AGTGNVVEAVRHVRSVNGAIRLLRSMDDDEVFTYAKKIAAPYDLVV 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,126,957
Number of Sequences: 28952
Number of extensions: 291931
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)