Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10693
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   6.8  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   9.0  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    25   9.0  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   9.0  

>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 656 VTIWTLHNPASRLLSNEGH 600
           V +W L NP  RL + EGH
Sbjct: 306 VALWDLRNPYQRLHTLEGH 324


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 481 NNIFFCPNARLPPLIIDDSYIN 546
           ++  F P   +PP+I+  SY+N
Sbjct: 300 DDYLFLPETDIPPIILSRSYVN 321


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = -2

Query: 545 FIYESSIIKGGNRAFGQKKMLLICQYRLILI*SSPSKNTVQNLH*IKVNT*PVIYVRCRS 366
           FI+ES  I GG+       +  +CQ  +I   S+ +    + L   K +       R  +
Sbjct: 43  FIFESKEIAGGSSGIDSAILTKLCQNEIIQPLSTLALKLYEGLD-KKFDGKKNWEYRTAN 101

Query: 365 EEFCDCQWNTKSIIRFSD 312
             FC  +W+  ++ +  D
Sbjct: 102 SWFCKMKWDNTNVAKVPD 119


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 142 LRNPILHQNFASNYLKPNRYAWLPKLVKQSFN 237
           LRN  L  N  SN++  N    +P L + S N
Sbjct: 169 LRNLTLDSNLFSNFISSNTVLLIPHLTQLSVN 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,986
Number of Sequences: 5004
Number of extensions: 58918
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)