Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10693
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49426| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)         30   2.4  
SB_28149| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_49426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +3

Query: 495 LSKCTIATFDNRRLIYKLSTNYEICVMRTARQTLRMP 605
           + + T  TF+ RR +  ++TN  +C  RTA QT++MP
Sbjct: 271 MPRSTKRTFERRRRL--MATNC-VCCTRTAEQTIKMP 304


>SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 392 PVIYVRCRSEEFCDCQWNTKS 330
           PV+Y+RC   ++C   W+ KS
Sbjct: 359 PVLYIRCEDPKYCPVLWHYKS 379


>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
          Length = 1306

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 392  PVIYVRCRSEEFCDCQWNTKS 330
            PV+Y+RC   ++C   W+ KS
Sbjct: 1128 PVLYIRCEDPKYCPVLWHYKS 1148


>SB_28149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 522 QRWQSCIWTKKNVIDMSIQIDFNI 451
           QR Q CIW++   +D +IQ DF++
Sbjct: 31  QRQQGCIWSRVLSLDSTIQPDFHL 54


>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -1

Query: 768 TYLCTGLWCQHSAYHR*QQQYYDLYLRRCPHVTV--ISGSHNLDVTQSGVAST 616
           T  C  +W   S      + YYD+  R+C        +G+HNL  T    + T
Sbjct: 565 TNACEKIWAPDSCASSEMRAYYDVTSRQCKQTEFWGCNGNHNLFSTVDSCSKT 617


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,198,896
Number of Sequences: 59808
Number of extensions: 412691
Number of successful extensions: 844
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)