Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10693
         (768 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98093-1|CAA66719.1| 1239|Homo sapiens DNA polymerase gamma prot...    30   7.9  
U60325-1|AAC50712.1| 1239|Homo sapiens DNA polymerase gamma prot...    30   7.9  
D84103-1|BAA12223.1| 1241|Homo sapiens mitochondrial DNA polymer...    30   7.9  
BC050559-1|AAH50559.1| 1239|Homo sapiens POLG protein protein.         30   7.9  
BC042571-1|AAH42571.1| 1239|Homo sapiens polymerase (DNA directe...    30   7.9  
AF497906-1|AAM77583.1| 1240|Homo sapiens polymerase (DNA directe...    30   7.9  

>X98093-1|CAA66719.1| 1239|Homo sapiens DNA polymerase gamma
           protein.
          Length = 1239

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 765 YLCTGLWCQHSAYHR*QQQYYDLYLRRCPHVTVISGSHNLDVT 637
           Y    +W  H  +    QQ   L+L RCPH   ++G   + V+
Sbjct: 395 YCAQDVWATHEVF----QQQLPLFLERCPHPVTLAGMLEMGVS 433


>U60325-1|AAC50712.1| 1239|Homo sapiens DNA polymerase gamma
           protein.
          Length = 1239

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 765 YLCTGLWCQHSAYHR*QQQYYDLYLRRCPHVTVISGSHNLDVT 637
           Y    +W  H  +    QQ   L+L RCPH   ++G   + V+
Sbjct: 395 YCAQDVWATHEVF----QQQLPLFLERCPHPVTLAGMLEMGVS 433


>D84103-1|BAA12223.1| 1241|Homo sapiens mitochondrial DNA polymerase
           gamma protein.
          Length = 1241

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 765 YLCTGLWCQHSAYHR*QQQYYDLYLRRCPHVTVISGSHNLDVT 637
           Y    +W  H  +    QQ   L+L RCPH   ++G   + V+
Sbjct: 397 YCAQDVWATHEVF----QQQLPLFLERCPHPVTLAGMLEMGVS 435


>BC050559-1|AAH50559.1| 1239|Homo sapiens POLG protein protein.
          Length = 1239

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 765 YLCTGLWCQHSAYHR*QQQYYDLYLRRCPHVTVISGSHNLDVT 637
           Y    +W  H  +    QQ   L+L RCPH   ++G   + V+
Sbjct: 395 YCAQDVWATHEVF----QQQLPLFLERCPHPVTLAGMLEMGVS 433


>BC042571-1|AAH42571.1| 1239|Homo sapiens polymerase (DNA directed),
           gamma protein.
          Length = 1239

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 765 YLCTGLWCQHSAYHR*QQQYYDLYLRRCPHVTVISGSHNLDVT 637
           Y    +W  H  +    QQ   L+L RCPH   ++G   + V+
Sbjct: 395 YCAQDVWATHEVF----QQQLPLFLERCPHPVTLAGMLEMGVS 433


>AF497906-1|AAM77583.1| 1240|Homo sapiens polymerase (DNA directed),
           gamma protein.
          Length = 1240

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 765 YLCTGLWCQHSAYHR*QQQYYDLYLRRCPHVTVISGSHNLDVT 637
           Y    +W  H  +    QQ   L+L RCPH   ++G   + V+
Sbjct: 396 YCAQDVWATHEVF----QQQLPLFLERCPHPVTLAGMLEMGVS 434


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,776,377
Number of Sequences: 237096
Number of extensions: 1862999
Number of successful extensions: 4276
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4276
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)