Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10693
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.5  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   5.5  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   5.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 151 PILHQNFASNYLKPNRYAWLP 213
           P+ HQ  A  YLKP+  A  P
Sbjct: 400 PVFHQEMALYYLKPSYDAQEP 420


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 522 QRWQSCIWTKKNVIDMSIQIDFNIIVSFKE 433
           Q+ Q C+  K+N ID  I++  +   SF +
Sbjct: 510 QKGQICLKEKENEIDFKIEVTEDCNKSFND 539


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 162 SKLRIELPKTKSLRVAAKACKTIF 233
           S LR+ +PK K + +  K  + IF
Sbjct: 449 SILRVSMPKIKDVNIIDKYSRIIF 472


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 522 QRWQSCIWTKKNVIDMSIQIDFNII 448
           QR+  CI  + N++D S     NI+
Sbjct: 60  QRYNECILKQFNIVDESGNFKENIV 84


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 522 QRWQSCIWTKKNVIDMSIQIDFNII 448
           QR+  CI  + N++D S     NI+
Sbjct: 60  QRYNECILKQFNIVDESGNFKENIV 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,241
Number of Sequences: 438
Number of extensions: 3968
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)